- r -

• R : core::scoring
• RadiusOfGyrationFeaturesCOP : protocols::features
• RadiusOfGyrationFeaturesOP : protocols::features
• Rama2bPerturberCOP : protocols::kinematic_closure::perturbers
• Rama2bPerturberOP : protocols::kinematic_closure::perturbers
• Ramachandran2BCOP : core::scoring
• Ramachandran2BOP : core::scoring
• RamachandranCOP : core::scoring
• RamachandranEnergy2BCOP : core::energy_methods
• RamachandranEnergy2BOP : core::energy_methods
• RamachandranEnergyCOP : core::energy_methods
• RamachandranEnergyOP : core::energy_methods
• RamachandranOP : core::scoring
• RamaCheck1BCOP : protocols::loops::loop_closure::ccd
• RamaCheck1BOP : protocols::loops::loop_closure::ccd
• RamaCheck2BCOP : protocols::loops::loop_closure::ccd
• RamaCheck2BOP : protocols::loops::loop_closure::ccd
• RamaCheckBaseCOP : protocols::loops::loop_closure::ccd
• RamaCheckBaseOP : protocols::loops::loop_closure::ccd
• RamaMutationSelectorCOP : protocols::cyclic_peptide
• RamaMutationSelectorOP : protocols::cyclic_peptide
• RamaPerturberCOP : protocols::kinematic_closure::perturbers
• RamaPerturberOP : protocols::kinematic_closure::perturbers
• RamaPreProCOP : core::scoring
• RamaPreProEnergyAP : core::energy_methods
• RamaPreProEnergyCAP : core::energy_methods
• RamaPreProEnergyCOP : core::energy_methods
• RamaPreProEnergyOP : core::energy_methods
• RamaPreProOP : core::scoring
• RamaScoreCOP : protocols::frag_picker::scores
• RamaScoreOP : protocols::frag_picker::scores
• RampingFuncCOP : protocols::moves
• RampingFuncOP : protocols::moves
• RampingMoverCOP : protocols::moves
• RampingMoverOP : protocols::moves
• RandomConformerMoverCOP : protocols::ligand_docking
• RandomConformerMoverOP : protocols::ligand_docking
• RandomGapSolutionPickerCOP : protocols::backbone_moves::local_backbone_mover::gap_solution_pickers
• RandomGapSolutionPickerOP : protocols::backbone_moves::local_backbone_mover::gap_solution_pickers
• RandomGlycanFoliageSelectorCOP : core::select::residue_selector
• RandomGlycanFoliageSelectorOP : core::select::residue_selector
• RandomizeBBByRamaPreProCOP : protocols::backbone_moves
• RandomizeBBByRamaPreProOP : protocols::backbone_moves
• RandomMoverCOP : protocols::moves
• RandomMoverOP : protocols::moves
• RandomMutationCOP : protocols::protein_interface_design::movers
• RandomMutationOP : protocols::protein_interface_design::movers
• RandomOmegaFlipMoverCOP : protocols::simple_moves
• RandomOmegaFlipMoverOP : protocols::simple_moves
• RandomPositionRotationMoverCOP : protocols::membrane
• RandomPositionRotationMoverOP : protocols::membrane
• RandomPositionTranslationMoverCOP : protocols::membrane
• RandomPositionTranslationMoverOP : protocols::membrane
• RandomResidueSelectorCOP : core::select::residue_selector
• RandomResidueSelectorOP : core::select::residue_selector
• RandomSolutionsCOP : protocols::kinematic_closure::solution_pickers
• RandomSolutionsOP : protocols::kinematic_closure::solution_pickers
• RandomSymmetrySliderCOP : protocols::symmetry
• RandomSymmetrySliderOP : protocols::symmetry
• RandomTorsionMoverCOP : protocols::simple_moves
• RandomTorsionMoverOP : protocols::simple_moves
• RandomTorsionPoseFolderCOP : protocols::denovo_design::components
• RandomTorsionPoseFolderOP : protocols::denovo_design::components
• Range : core::fragment
• RangeFilterCOP : protocols::simple_filters
• RangeFilterOP : protocols::simple_filters
• RangeRelaxMoverCOP : protocols::relax
• RangeRelaxMoverOP : protocols::relax
• RationalMonteCarloCOP : protocols::simple_moves::rational_mc
• RationalMonteCarloOP : protocols::simple_moves::rational_mc
• RationalMonteCarloTrigger : protocols::simple_moves::rational_mc
• RawStructOP : core::io::raw_data
• RBConsIt : protocols::rbsegment_relax
• RBfitResultDB : protocols::electron_density
• RBInMoverCOP : protocols::splice
• RBInMoverOP : protocols::splice
• RBIt : protocols::rbsegment_relax
• RBOutMoverCOP : protocols::splice
• RBOutMoverOP : protocols::splice
• RBSegmentMoverOP : protocols::rbsegment_relax
• RBSegmentOP : protocols::rbsegment_relax
• RBSegmentRelaxImplOP : protocols
• RDATCOP : core::io::rna
• RDATOP : core::io::rna
• RDC_lines_collection : protocols::scoring
• RDCDataAP : core::scoring::nmr::rdc
• RDCDataCAP : core::scoring::nmr::rdc
• RDCDataCOP : core::scoring::nmr::rdc
• RDCDataOP : core::scoring::nmr::rdc
• RDCEnergyAP : protocols::nmr::rdc
• RDCEnergyCAP : protocols::nmr::rdc
• RDCEnergyCOP : protocols::nmr::rdc
• RDCEnergyOP : protocols::nmr::rdc
• RDCMultiSetAP : core::scoring::nmr::rdc
• RDCMultiSetCAP : core::scoring::nmr::rdc
• RDCMultiSetCOP : core::scoring::nmr::rdc
• RDCMultiSetOP : core::scoring::nmr::rdc
• RDCSingleAP : core::scoring::nmr::rdc
• RDCSingleCAP : core::scoring::nmr::rdc
• RDCSingleCOP : core::scoring::nmr::rdc
• RDCSingleOP : core::scoring::nmr::rdc
• RDCSingleSetAP : core::scoring::nmr::rdc
• RDCSingleSetCAP : core::scoring::nmr::rdc
• RDCSingleSetCOP : core::scoring::nmr::rdc
• RDCSingleSetOP : core::scoring::nmr::rdc
• RDCTensorAP : core::scoring::nmr::rdc
• RDCTensorCAP : core::scoring::nmr::rdc
• RDCTensorCOP : core::scoring::nmr::rdc
• RDCTensorOP : core::scoring::nmr::rdc
• RDFBaseOP : protocols::ligand_docking::rdf
• RDFFunctionCreatorCOP : protocols::ligand_docking::rdf
• RDFFunctionCreatorOP : protocols::ligand_docking::rdf
• RDFResultList : protocols::ligand_docking::rdf
• RDKitMetricCOP : protocols::drug_design
• RDKitMetricOP : protocols::drug_design
• RDKitMetricsMoverCOP : protocols::drug_design
• RDKitMetricsMoverOP : protocols::drug_design
• ReactionSite : protocols::enzymatic_movers
• ReadPoseExtraScoreFilterCOP : protocols::simple_filters
• ReadPoseExtraScoreFilterOP : protocols::simple_filters
• ReadResfileAndObeyLengthEventsOP : core::pack::task::operation
• ReadResfileFromDBOP : protocols::task_operations
• ReadResfileOP : core::pack::task::operation
• ReadResidueCoordinatesFromPDBCOP : protocols::chromophore
• ReadResidueCoordinatesFromPDBOP : protocols::chromophore
• Real : core , protocols::fldsgn::potentials::sspot , protocols::flxbb , protocols::moves , protocols::protein_interface_design::movers , protocols::protein_interface_design , protocols::rosetta_scripts , protocols::sic_dock , protocols::sic_dock::scores
• Real4 : core::pack::dunbrack
• Real5 : core::pack::dunbrack
• Real6 : protocols::match
• RealCIter : core::scoring::packstat
• RealIter : core::scoring::packstat
• RealMetricCOP : core::simple_metrics
• RealMetricCreatorCOP : core::simple_metrics
• RealMetricCreatorOP : core::simple_metrics
• RealMetricOP : core::simple_metrics
• RealResidueAdjacentIter : core::chemical
• RealResidueAdjacentIterPair : core::chemical
• RealResidueED : core::chemical
• RealResidueEIter : core::chemical
• RealResidueGraph : core::chemical
• RealResidueOutEdgeIter : core::chemical
• RealResidueOutEdgeIterPair : core::chemical
• RealResidueVD : core::chemical
• RealResidueVIter : core::chemical
• RealResidueVIterPair : core::chemical
• Reals : core::scoring::motif , core::scoring::packstat , protocols::kinmatch , protocols::sasa_scores , protocols::sic_dock , protocols::sic_dock::scores
• RealValuedParameterAP : core::conformation::parametric
• RealValuedParameterCAP : core::conformation::parametric
• RealValuedParameterCAPs : core::conformation::parametric
• RealValuedParameterCOP : core::conformation::parametric
• RealValuedParameterCOPs : core::conformation::parametric
• RealValuedParameterOP : core::conformation::parametric
• RealValuedParameterOPs : core::conformation::parametric
• RealVectorValuedParameterAP : core::conformation::parametric
• RealVectorValuedParameterCAP : core::conformation::parametric
• RealVectorValuedParameterCAPs : core::conformation::parametric
• RealVectorValuedParameterCOP : core::conformation::parametric
• RealVectorValuedParameterCOPs : core::conformation::parametric
• RealVectorValuedParameterOP : core::conformation::parametric
• RealVectorValuedParameterOPs : core::conformation::parametric
• RECCES_MoverCOP : protocols::recces
• RECCES_MoverOP : protocols::recces
• RECCES_OptionsCOP : protocols::recces::options
• RECCES_OptionsOP : protocols::recces::options
• RECCES_ParametersCOP : protocols::recces::params
• RECCES_ParametersOP : protocols::recces::params
• Record : core::io::pdb
• RecordDef : core::io::pdb
• RecoverSideChainsMoverCOP : protocols::comparative_modeling
• RecoverSideChainsMoverOP : protocols::comparative_modeling
• ReferenceEnergyCOP : core::energy_methods
• ReferenceEnergyNoncanonicalCOP : core::energy_methods
• ReferenceEnergyNoncanonicalOP : core::energy_methods
• ReferenceEnergyOP : core::energy_methods
• ReferencePoseAP : core::pose::reference_pose
• ReferencePoseCAP : core::pose::reference_pose
• ReferencePoseCAPs : core::pose::reference_pose
• ReferencePoseCOP : core::pose::reference_pose
• ReferencePoseCOPs : core::pose::reference_pose
• ReferencePoseOP : core::pose::reference_pose
• ReferencePoseOPs : core::pose::reference_pose
• ReferencePoseSetAP : core::pose::reference_pose
• ReferencePoseSetCAP : core::pose::reference_pose
• ReferencePoseSetCAPs : core::pose::reference_pose
• ReferencePoseSetCOP : core::pose::reference_pose
• ReferencePoseSetCOPs : core::pose::reference_pose
• ReferencePoseSetOP : core::pose::reference_pose
• ReferencePoseSetOPs : core::pose::reference_pose
• RefineBetaBarrelCOP : protocols::antibody
• RefineBetaBarrelOP : protocols::antibody
• RefinementResultDB : protocols::electron_density
• RefTag : core::import_pose::atom_tree_diffs
• RefTags : core::import_pose::atom_tree_diffs
• RegionCOP : protocols::nonlocal
• RegionOP : protocols::nonlocal
• RegisterShift : protocols::denovo_design::components
• RegisterShifts : protocols::denovo_design::components
• RelativeConnectRightAP : protocols::forge::build
• RelativeConnectRightCAP : protocols::forge::build
• RelativeConnectRightCOP : protocols::forge::build
• RelativeConnectRightOP : protocols::forge::build
• RelativePoseFilterCOP : protocols::calc_taskop_filters
• RelativePoseFilterOP : protocols::calc_taskop_filters
• RelativeSegmentCOP : protocols::protein_interface_design::filters
• RelativeSegmentOP : protocols::protein_interface_design::filters
• RelativeSequencePositionAP : protocols::forge::build
• RelativeSequencePositionCAP : protocols::forge::build
• RelativeSequencePositionCOP : protocols::forge::build
• RelativeSequencePositionOP : protocols::forge::build
• RelaxProtocolBaseAP : protocols::relax
• RelaxProtocolBaseCAP : protocols::relax
• RelaxProtocolBaseCOP : protocols::relax
• RelaxProtocolBaseOP : protocols::relax
• RelaxScriptFileContentsCOP : protocols::relax
• RelaxScriptFileContentsOP : protocols::relax
• RelaxScriptManagerCOP : protocols::relax
• RelaxScriptManagerOP : protocols::relax
• ReleaseConstraintFromResidueMoverCOP : protocols::fold_from_loops::movers
• ReleaseConstraintFromResidueMoverOP : protocols::fold_from_loops::movers
• RemarksCOP : core::io
• RemarksOP : core::io
• RemodelConstraintGeneratorAP : protocols::forge::remodel
• RemodelConstraintGeneratorCAP : protocols::forge::remodel
• RemodelConstraintGeneratorCOP : protocols::forge::remodel
• RemodelConstraintGeneratorOP : protocols::forge::remodel
• RemodelEnzdesCstModuleOP : protocols::forge::remodel
• RemodelGlobalFrame_AP : protocols::forge::remodel
• RemodelGlobalFrame_CAP : protocols::forge::remodel
• RemodelGlobalFrame_COP : protocols::forge::remodel
• RemodelGlobalFrame_OP : protocols::forge::remodel
• RemodelLigandHandler_AP : protocols::forge::remodel
• RemodelLigandHandler_CAP : protocols::forge::remodel
• RemodelLigandHandler_COP : protocols::forge::remodel
• RemodelLigandHandler_OP : protocols::forge::remodel
• RemodelLoopMoverAP : protocols::forge::remodel
• RemodelLoopMoverCAP : protocols::forge::remodel
• RemodelLoopMoverCOP : protocols::forge::remodel
• RemodelLoopMoverOP : protocols::forge::remodel
• RemodelLoopMoverPoseFolderCOP : protocols::denovo_design::components
• RemodelLoopMoverPoseFolderOP : protocols::denovo_design::components
• RemodelMover_AP : protocols::forge::remodel
• RemodelMover_CAP : protocols::forge::remodel
• RemodelMover_COP : protocols::forge::remodel
• RemodelMover_OP : protocols::forge::remodel
• RemodelRotamerLinksOP : protocols::forge::remodel
• RemoveConstraintsCOP : protocols::constraint_generator
• RemoveConstraintsOP : protocols::constraint_generator
• RemoveLigandFilterOP : protocols::enzdes
• RemoveMetalConnectionsMoverCOP : protocols::metal_interface
• RemoveMetalConnectionsMoverOP : protocols::metal_interface
• RepackingRefinerCOP : protocols::loop_modeling::refiners
• RepackingRefinerOP : protocols::loop_modeling::refiners
• RepackSidechainsMoverCOP : protocols::minimization_packing
• RepackSidechainsMoverOP : protocols::minimization_packing
• RepackTrialCOP : protocols::loops::loop_mover::refine
• RepackTrialOP : protocols::loops::loop_mover::refine
• RepeatMoverCOP : protocols::moves
• RepeatMoverOP : protocols::moves
• RepeatParameterFilterCOP : protocols::simple_filters
• RepeatParameterFilterOP : protocols::simple_filters
• RepeatPropagationMoverCOP : protocols::simple_moves
• RepeatPropagationMoverOP : protocols::simple_moves
• RepeatProteinRelaxCOP : protocols::simple_moves
• RepeatProteinRelaxOP : protocols::simple_moves
• ReplaceRegionMoverCOP : protocols::grafting
• ReplaceRegionMoverOP : protocols::grafting
• ReplicaExchangeMC_COP : protocols::moves
• ReplicaExchangeMC_OP : protocols::moves
• ReplicateFilterCOP : protocols::filters
• ReplicateFilterOP : protocols::filters
• ReplicateTaskAP : core::pack::task::operation
• ReplicateTaskCAP : core::pack::task::operation
• ReplicateTaskCOP : core::pack::task::operation
• ReplicateTaskOP : core::pack::task::operation
• ReportCOP : protocols::features
• ReportOP : protocols::features
• ReportToDBCOP : protocols::features
• ReportToDBOP : protocols::features
• ReportXYZCOP : protocols::simple_moves
• ReportXYZOP : protocols::simple_moves
• RepresentativeOutputterMap : protocols::jd3::standard
• RepulsiveOnlyMoverCOP : protocols::simple_moves
• RepulsiveOnlyMoverOP : protocols::simple_moves
• res_matrix : protocols::splice
• ResampleMoverCOP : protocols::stepwise::monte_carlo::mover
• ResampleMoverCreatorCOP : protocols::stepwise::monte_carlo::mover
• ResampleMoverCreatorOP : protocols::stepwise::monte_carlo::mover
• ResampleMoverOP : protocols::stepwise::monte_carlo::mover
• ResElecGroup : core::scoring::elec
• ResetBaselineMoverCOP : protocols::monte_carlo
• ResetBaselineMoverOP : protocols::monte_carlo
• ResetFoldTreeCOP : protocols::simple_moves
• ResetFoldTreeOP : protocols::simple_moves
• ResetFullModelInfoMoverCOP : protocols::simple_moves
• ResetFullModelInfoMoverOP : protocols::simple_moves
• ResfileCommandCOP : core::pack::task
• ResfileCommandOP : core::pack::task
• ResfileCommandOperationCOP : protocols::task_operations
• ResfileCommandOperationOP : protocols::task_operations
• ResfileContentsCOP : core::pack::task
• ResfileContentsOP : core::pack::task
• ResFilterCOP : core::pack::task::operation
• ResFilterCreatorCOP : core::pack::task::operation
• ResFilterCreatorOP : core::pack::task::operation
• ResFilterFactoryCOP : core::pack::task::operation
• ResFilterFactoryOP : core::pack::task::operation
• ResFilterOP : core::pack::task::operation
• ResHashMapCOP : protocols::mean_field
• ResHashMapOP : protocols::mean_field
• ResIdCOP : protocols::moves
• ResIdOP : protocols::moves
• ResidualDipolarCoupling_RohlCOP : core::scoring
• ResidualDipolarCoupling_RohlOP : core::scoring
• ResidualDipolarCouplingCOP : core::scoring
• ResidualDipolarCouplingEnergyOP : core::energy_methods
• ResidualDipolarCouplingEnergyRigidSegmentsOP : protocols::scoring::methods
• ResidualDipolarCouplingOP : core::scoring
• ResidualDipolarCouplingRigidSegmentsCOP : protocols::scoring
• ResidualDipolarCouplingRigidSegmentsOP : protocols::scoring
• ResidueAlternativeSetCOP : protocols::stepwise::sampler::copy_dofs
• ResidueAlternativeSetOP : protocols::stepwise::sampler::copy_dofs
• ResidueAlternativeStepWiseSamplerCombCOP : protocols::stepwise::sampler::copy_dofs
• ResidueAlternativeStepWiseSamplerCombOP : protocols::stepwise::sampler::copy_dofs
• ResidueAlternativeStepWiseSamplerCOP : protocols::stepwise::sampler::copy_dofs
• ResidueAlternativeStepWiseSamplerOP : protocols::stepwise::sampler::copy_dofs
• ResidueAP : core::conformation
• ResidueArrayAnnealableEnergyCOP : core::scoring::annealing
• ResidueArrayAnnealableEnergyOP : core::scoring::annealing
• ResidueArrayAnnealingEvaluatorOP : core::pack::interaction_graph
• ResidueAtomTreeCollectionCOP : core::pack::scmin
• ResidueAtomTreeCollectionMomentoCOP : core::pack::scmin
• ResidueAtomTreeCollectionMomentoOP : core::pack::scmin
• ResidueAtomTreeCollectionOP : core::pack::scmin
• ResidueBurialFeaturesCOP : protocols::features
• ResidueBurialFeaturesOP : protocols::features
• ResidueCAP : core::conformation
• ResidueCAPs : core::conformation
• ResidueCartBondedParametersAP : core::energy_methods
• ResidueCartBondedParametersCAP : core::energy_methods
• ResidueCartBondedParametersCOP : core::energy_methods
• ResidueCartBondedParametersOP : core::energy_methods
• ResidueConformationFeaturesCOP : protocols::features
• ResidueConformationFeaturesOP : protocols::features
• ResidueConstraintsCOP : core::scoring::constraints
• ResidueConstraintsOP : core::scoring::constraints
• ResidueContactScreenerCOP : protocols::stepwise::screener
• ResidueContactScreenerOP : protocols::stepwise::screener
• ResidueCoordinateChangeListOP : core::kinematics
• ResidueCOP : core::conformation , core::scoring::nmr
• ResidueCOPs : core::conformation
• ResidueCouplingConstraintCOP : core::scoring::constraints
• ResidueCouplingConstraintOP : core::scoring::constraints
• ResidueDecompositionByChainCalculatorCOP : protocols::pose_metric_calculators
• ResidueDecompositionByChainCalculatorOP : protocols::pose_metric_calculators
• ResidueDepthDataCOP : protocols::simple_filters
• ResidueDepthDataOP : protocols::simple_filters
• ResidueDOFReporterCOP : core::pack::dunbrack
• ResidueDOFReporterOP : core::pack::dunbrack
• ResidueElements : protocols::environment::claims
• ResidueExclParamsCOP : core::scoring
• ResidueExclParamsOP : core::scoring
• ResidueFeatureCOP : protocols::comparative_modeling::features
• ResidueFeatureOP : protocols::comparative_modeling::features
• ResidueFeaturesCOP : protocols::features
• ResidueFeaturesOP : protocols::features
• ResidueGraph : core::chemical
• ResidueGridScoresFeaturesCOP : protocols::features
• ResidueGridScoresFeaturesOP : protocols::features
• ResidueHasPropertyOP : core::pack::task::operation
• ResidueIEFilterCOP : protocols::simple_filters
• ResidueIEFilterOP : protocols::simple_filters
• ResidueIndexDescriptionCOP : core::pose
• ResidueIndexDescriptionOP : core::pose
• ResidueIndexIsntOP : core::pack::task::operation
• ResidueIndexIsOP : core::pack::task::operation
• ResidueIndexList : core::kinematics
• ResidueIndexSelectorCOP : core::select::residue_selector
• ResidueIndexSelectorOP : core::select::residue_selector
• ResidueInMembraneSelectorCOP : core::select::residue_selector
• ResidueInMembraneSelectorOP : core::select::residue_selector
• ResidueInSequenceMotifSelectorCOP : core::select::residue_selector
• ResidueInSequenceMotifSelectorOP : core::select::residue_selector
• ResidueKinWriterCOP : core::conformation
• ResidueKinWriterOP : core::conformation
• ResidueLabelsToPymolSelectionMoverCOP : protocols::fold_from_loops::movers
• ResidueLabelsToPymolSelectionMoverOP : protocols::fold_from_loops::movers
• ResidueLacksPropertyOP : core::pack::task::operation
• ResidueListIterator : core::kinematics
• ResidueListStepWiseSamplerCOP : protocols::stepwise::sampler::copy_dofs
• ResidueListStepWiseSamplerOP : protocols::stepwise::sampler::copy_dofs
• ResidueMaskOP : protocols::constel
• ResidueMatcherCOP : core::conformation
• ResidueMatcherOP : core::conformation
• ResidueName3IsntOP : core::pack::task::operation
• ResidueName3IsOP : core::pack::task::operation
• ResidueNameSelectorCOP : core::select::residue_selector
• ResidueNameSelectorOP : core::select::residue_selector
• ResidueNblistDataCOP : core::scoring
• ResidueNblistDataOP : core::scoring
• ResidueNeighborConstIteratorCOP : core::scoring
• ResidueNeighborConstIteratorOP : core::scoring
• ResidueNeighborIteratorCOP : core::scoring
• ResidueNeighborIteratorOP : core::scoring
• ResidueNetworkCOP : protocols::toolbox
• ResidueNetworkOP : protocols::toolbox
• ResidueOP : core::conformation , core::scoring::nmr
• ResidueOPs : core::conformation
• ResiduePair : protocols::denovo_design::components
• ResiduePairJumpCOP : protocols::jumping
• ResiduePairJumpOP : protocols::jumping
• ResiduePairJumpSetupCOP : protocols::jumping
• ResiduePairJumpSetupOP : protocols::jumping
• ResiduePairJumpSetupSingleCOP : protocols::jumping
• ResiduePairJumpSetupSingleOP : protocols::jumping
• ResiduePairJumpSingleCOP : protocols::jumping
• ResiduePairJumpSingleOP : protocols::jumping
• ResiduePairNeighborListCOP : core::scoring
• ResiduePairNeighborListOP : core::scoring
• ResiduePairs : protocols::denovo_design::components , protocols::fldsgn
• ResiduePDBIndexIsntOP : core::pack::task::operation
• ResiduePDBIndexIsOP : core::pack::task::operation
• ResiduePDBInfoHasLabelOP : core::pack::task::operation
• ResiduePDBInfoHasLabelSelectorCOP : core::select::residue_selector
• ResiduePDBInfoHasLabelSelectorOP : core::select::residue_selector
• ResidueProbDesignOperationCOP : protocols::task_operations
• ResidueProbDesignOperationOP : protocols::task_operations
• ResiduePropertiesCOP : core::chemical
• ResiduePropertiesOP : core::chemical
• ResiduePropertySelectorCOP : core::select::residue_selector
• ResiduePropertySelectorOP : core::select::residue_selector
• ResidueRangesAP : core::select::residue_selector
• ResidueRangesCAP : core::select::residue_selector
• ResidueRangesCOP : core::select::residue_selector
• ResidueRangesOP : core::select::residue_selector
• ResidueReplacementRebuildMoverCOP : protocols::ncbb
• ResidueReplacementRebuildMoverOP : protocols::ncbb
• ResidueScoresFeaturesCOP : protocols::features
• ResidueScoresFeaturesOP : protocols::features
• ResidueSecondaryStructureFeaturesCOP : protocols::features
• ResidueSecondaryStructureFeaturesOP : protocols::features
• ResidueSelection : core::scoring
• ResidueSelectionVector : core::scoring
• ResidueSelectorAP : core::select::residue_selector
• ResidueSelectorCAP : core::select::residue_selector
• ResidueSelectorCOP : core::select::residue_selector
• ResidueSelectorCreatorCOP : core::select::residue_selector
• ResidueSelectorCreatorOP : core::select::residue_selector
• ResidueSelectorOP : core::select::residue_selector
• ResidueSpanSelectorCOP : core::select::residue_selector
• ResidueSpanSelectorOP : core::select::residue_selector
• ResidueSubset : core::select::residue_selector
• ResidueSubsetAP : core::select::residue_selector
• ResidueSubsetCAP : core::select::residue_selector
• ResidueSubsetCOP : core::select::residue_selector
• ResidueSubsetOP : core::select::residue_selector
• ResidueSummaryMetricCOP : core::simple_metrics::metrics
• ResidueSummaryMetricOP : core::simple_metrics::metrics
• ResidueTorsionRestraintsCOP : protocols::ligand_docking
• ResidueTorsionRestraintsOP : protocols::ligand_docking
• ResidueTotalScoresFeaturesCOP : protocols::features
• ResidueTotalScoresFeaturesOP : protocols::features
• ResidueTypeAP : core::chemical
• ResidueTypeBaseAP : core::chemical
• ResidueTypeBaseCAP : core::chemical
• ResidueTypeBaseCOP : core::chemical
• ResidueTypeBaseOP : core::chemical
• ResidueTypeCAP : core::chemical
• ResidueTypeCAPs : core::chemical
• ResidueTypeConstraintCOP : core::scoring::constraints
• ResidueTypeConstraintGeneratorCOP : protocols::constraint_generator
• ResidueTypeConstraintGeneratorOP : protocols::constraint_generator
• ResidueTypeConstraintMoverCOP : protocols::constraint_movers
• ResidueTypeConstraintMoverOP : protocols::constraint_movers
• ResidueTypeConstraintOP : core::scoring::constraints
• ResidueTypeCOP : core::chemical
• ResidueTypeCOPs : core::chemical
• ResidueTypeFinderCOP : core::chemical
• ResidueTypeFinderOP : core::chemical
• ResidueTypeKinWriterCOP : core::chemical
• ResidueTypeKinWriterOP : core::chemical
• ResidueTypeLinkingConstraintCOP : core::scoring::constraints
• ResidueTypeLinkingConstraintOP : core::scoring::constraints
• ResidueTypeOP : core::chemical
• ResidueTypeOPs : core::chemical
• ResidueTypeSelectorOP : core::chemical
• ResidueTypeSelectorSingleOP : core::chemical
• ResidueTypeSetCacheCOP : core::chemical
• ResidueTypeSetCacheOP : core::chemical
• ResidueTypeSetCAP : core::chemical
• ResidueTypeSetCOP : core::chemical
• ResidueTypeSetOP : core::chemical
• ResidueTypesFeaturesCOP : protocols::features
• ResidueTypesFeaturesOP : protocols::features
• ResidueVectorAP : core::select::residue_selector
• ResidueVectorCAP : core::select::residue_selector
• ResidueVectorCOP : core::select::residue_selector
• ResidueVectorOP : core::select::residue_selector
• ResidueVicinityInfoCOP : protocols::forge::remodel
• ResidueVicinityInfoOP : protocols::forge::remodel
• ResidueVicinityRCGCAP : protocols::forge::remodel
• ResidueVicinityRCGOP : protocols::forge::remodel
• ResLvlTaskOperationCOP : core::pack::task::operation
• ResLvlTaskOperationCreatorCOP : core::pack::task::operation
• ResLvlTaskOperationCreatorOP : core::pack::task::operation
• ResLvlTaskOperationFactoryCOP : core::pack::task::operation
• ResLvlTaskOperationFactoryOP : core::pack::task::operation
• ResLvlTaskOperationOP : core::pack::task::operation
• ResMap : core::pose , protocols::stepwise::modeler::protein
• ResolutionSwitcherCOP : protocols::abinitio
• ResolutionSwitcherOP : protocols::abinitio
• ResonanceAP : protocols::noesy_assign
• ResonanceCAP : protocols::noesy_assign
• ResonanceCOP : protocols::noesy_assign
• ResonanceListAP : protocols::noesy_assign
• ResonanceListCAP : protocols::noesy_assign
• ResonanceListCOP : protocols::noesy_assign
• ResonanceListOP : protocols::noesy_assign
• ResonanceOP : protocols::noesy_assign
• ResourceDeallocationMessageCOP : protocols::jd3::deallocation
• ResourceDeallocationMessageOP : protocols::jd3::deallocation
• RespairInteractionsCOP : core::scoring::custom_pair_distance
• RespairInteractionsOP : core::scoring::custom_pair_distance
• ResPairMinimizationDataCOP : core::scoring
• ResPairMinimizationDataOP : core::scoring
• ResPairMotifPtrs : core::scoring::motif
• ResPairMotifsMap : core::scoring::motif
• ResPairMotifsStringMap : core::scoring::motif
• ResSingleMinimizationDataCOP : core::scoring
• ResSingleMinimizationDataOP : core::scoring
• RestrictAbsentCanonicalAASOP : core::pack::task::operation
• RestrictAbsentCanonicalAASRLTOP : core::pack::task::operation
• RestrictByCalculatorsOperationCOP : protocols::task_operations
• RestrictByCalculatorsOperationOP : protocols::task_operations
• RestrictChainToRepackingOperationCOP : protocols::task_operations
• RestrictChainToRepackingOperationOP : protocols::task_operations
• RestrictConservedLowDdgOperationOP : protocols::task_operations
• RestrictDesignToProteinDNAInterfaceOP : protocols::dna
• RestrictIdentitiesAtAlignedPositionsOperationCOP : protocols::task_operations
• RestrictIdentitiesAtAlignedPositionsOperationOP : protocols::task_operations
• RestrictIdentitiesOperationCOP : protocols::task_operations
• RestrictIdentitiesOperationOP : protocols::task_operations
• RestrictInteractionGraphThreadsOperationCOP : core::pack::task::operation
• RestrictInteractionGraphThreadsOperationOP : core::pack::task::operation
• RestrictInterGroupVectorOperationCOP : protocols::task_operations
• RestrictInterGroupVectorOperationOP : protocols::task_operations
• RestrictNativeResiduesOperationOP : protocols::task_operations
• RestrictNonSurfaceToRepackingOperationOP : protocols::task_operations
• RestrictOperationsBaseCOP : protocols::task_operations
• RestrictOperationsBaseOP : protocols::task_operations
• RestrictResiduesToRepackingOperationCOP : protocols::task_operations
• RestrictResiduesToRepackingOperationOP : protocols::task_operations
• RestrictResidueToRepackingOP : core::pack::task::operation
• RestrictToAlignedSegmentsOperationCOP : protocols::task_operations
• RestrictToAlignedSegmentsOperationOP : protocols::task_operations
• RestrictToCDRH3LoopOP : protocols::task_operations
• RestrictToCDRsAndNeighborsCOP : protocols::antibody::task_operations
• RestrictToCDRsAndNeighborsOP : protocols::antibody::task_operations
• RestrictToInterfaceCOP : protocols::simple_task_operations
• RestrictToInterfaceOP : protocols::simple_task_operations
• RestrictToInterfaceOperationCOP : protocols::task_operations
• RestrictToInterfaceOperationOP : protocols::task_operations
• RestrictToInterfaceVectorOperationCOP : protocols::task_operations
• RestrictToInterfaceVectorOperationOP : protocols::task_operations
• RestrictToLoopsAndNeighborsOP : protocols::simple_task_operations
• RestrictToLoopsOP : protocols::simple_task_operations
• RestrictToMoveMapChiOperationOP : protocols::task_operations
• RestrictToNeighborhoodOperationCOP : protocols::task_operations
• RestrictToNeighborhoodOperationOP : protocols::task_operations
• RestrictToRepackingOP : core::pack::task::operation
• RestrictToRepackingRLTOP : core::pack::task::operation
• RestrictToResiduePropertiesOP : core::pack::task::operation
• RestrictToSpecifiedBaseResidueTypesOP : core::pack::task::operation
• RestrictToTerminiOperationCOP : protocols::task_operations
• RestrictToTerminiOperationOP : protocols::task_operations
• RestrictYSDesignOP : core::pack::task::operation
• Restype_Variants_VariantStrings_Exceptions : core::chemical
• ResTypeFragmentMoverCOP : protocols::simple_moves
• ResTypeFragmentMoverOP : protocols::simple_moves
• RestypeInfoGraph : core::io::pose_from_sfr
• ResTypeSequence : protocols::dna
• ResTypeSequences : protocols::dna
• ResultIndex : protocols::jd3
• ResultOutputterCOP : protocols::jd3::output
• ResultOutputterOP : protocols::jd3::output
• RESULTS : core::scoring::sc
• RetrieveStoredTaskOperationCOP : protocols::task_operations
• RetrieveStoredTaskOperationOP : protocols::task_operations
• ReturnResidueSubsetSelectorCOP : core::select::residue_selector
• ReturnResidueSubsetSelectorOP : core::select::residue_selector
• ReturnSidechainMoverCOP : protocols::simple_moves
• ReturnSidechainMoverOP : protocols::simple_moves
• Reversions : protocols::dna
• RG_Local_MinDataOP : core::energy_methods
• RG_MinDataOP : core::energy_methods
• RID_SourceCOP : core::pose
• RID_SourceOP : core::pose
• RigidBodyDeterministicSpinMoverCOP : protocols::rigid
• RigidBodyDeterministicSpinMoverOP : protocols::rigid
• RigidBodyDofPerturbMoverCOP : protocols::rigid
• RigidBodyDofPerturbMoverOP : protocols::rigid
• RigidBodyDofRandomizeMoverCOP : protocols::rigid
• RigidBodyDofRandomizeMoverOP : protocols::rigid
• RigidBodyDofRandomTransMoverCOP : protocols::rigid
• RigidBodyDofRandomTransMoverOP : protocols::rigid
• RigidBodyDofSeqPerturbMoverCOP : protocols::rigid
• RigidBodyDofSeqPerturbMoverOP : protocols::rigid
• RigidBodyDofSeqRandomizeMoverCOP : protocols::rigid
• RigidBodyDofSeqRandomizeMoverOP : protocols::rigid
• RigidBodyDofSeqTransMoverCOP : protocols::rigid
• RigidBodyDofSeqTransMoverOP : protocols::rigid
• RigidBodyDofTransMoverCOP : protocols::rigid
• RigidBodyDofTransMoverOP : protocols::rigid
• RigidBodyInfoCOP : protocols::docking
• RigidBodyInfoOP : protocols::docking
• RigidBodyMotionMoverCOP : protocols::rigid
• RigidBodyMotionMoverOP : protocols::rigid
• RigidBodyMoverCOP : protocols::rigid
• RigidBodyMoverOP : protocols::rigid
• RigidBodyMoveRSOCOP : protocols::toolbox::rotamer_set_operations
• RigidBodyMoveRSOOP : protocols::toolbox::rotamer_set_operations
• RigidBodyPerturbMoverCOP : protocols::rigid
• RigidBodyPerturbMoverOP : protocols::rigid
• RigidBodyPerturbNoCenterMoverCOP : protocols::rigid
• RigidBodyPerturbNoCenterMoverOP : protocols::rigid
• RigidBodyPerturbRandomJumpMoverCOP : protocols::rigid
• RigidBodyPerturbRandomJumpMoverOP : protocols::rigid
• RigidBodyRandomizeMoverCOP : protocols::rigid
• RigidBodyRandomizeMoverOP : protocols::rigid
• RigidBodyRandomTMHMoverCOP : protocols::topology_broker
• RigidBodyRandomTMHMoverOP : protocols::topology_broker
• RigidBodySpinMoverCOP : protocols::rigid
• RigidBodySpinMoverOP : protocols::rigid
• RigidBodyStepWiseSamplerCOP : protocols::stepwise::sampler::rigid_body
• RigidBodyStepWiseSamplerOP : protocols::stepwise::sampler::rigid_body
• RigidBodyStepWiseSamplerValueRangeCOP : protocols::stepwise::sampler::rigid_body
• RigidBodyStepWiseSamplerValueRangeOP : protocols::stepwise::sampler::rigid_body
• RigidBodyStepWiseSamplerWithResidueAlternativesCOP : protocols::stepwise::sampler::rigid_body
• RigidBodyStepWiseSamplerWithResidueAlternativesOP : protocols::stepwise::sampler::rigid_body
• RigidBodyStepWiseSamplerWithResidueListCOP : protocols::stepwise::sampler::rigid_body
• RigidBodyStepWiseSamplerWithResidueListOP : protocols::stepwise::sampler::rigid_body
• RigidBodyTiltMoverCOP : protocols::rigid
• RigidBodyTiltMoverOP : protocols::rigid
• RigidBodyTransMoverCOP : protocols::rigid
• RigidBodyTransMoverOP : protocols::rigid
• RigidChunkClaimerAP : protocols::topology_broker
• RigidChunkClaimerCAP : protocols::topology_broker
• RigidChunkClaimerCOP : protocols::topology_broker
• RigidChunkClaimerOP : protocols::topology_broker
• RigidChunkCMCOP : protocols::abinitio::abscript
• RigidChunkCMOP : protocols::abinitio::abscript
• RigidLigandBuilderCOP : protocols::match::downstream
• RigidLigandBuilderOP : protocols::match::downstream
• RigidScoreCOP : protocols::sic_dock
• RigidScoreOP : protocols::sic_dock
• RigidSearchMoverCOP : protocols::ligand_docking
• RigidSearchMoverOP : protocols::ligand_docking
• RIGVD : core::io::pose_from_sfr
• RingClosureEnergyCOP : core::energy_methods
• RingClosureEnergyOP : core::energy_methods
• RingConformationMoverCOP : protocols::simple_moves
• RingConformationMoverOP : protocols::simple_moves
• RingConformerSetCOP : core::chemical::rings
• RingConformerSetOP : core::chemical::rings
• RingPlaneFlipMoverCOP : protocols::carbohydrates
• RingPlaneFlipMoverOP : protocols::carbohydrates
• RmsdFromResidueSelectorFilterCOP : protocols::fold_from_loops::filters
• RmsdFromResidueSelectorFilterOP : protocols::fold_from_loops::filters
• RMSDMetricCOP : core::simple_metrics::metrics
• RMSDMetricOP : core::simple_metrics::metrics
• RNA_AddDeleteMonteCarloOP : protocols::stepwise::monte_carlo::rna
• RNA_AnalyticLoopCloserOP : protocols::stepwise::legacy::modeler::rna
• RNA_AtomVDWCOP : core::scoring::rna
• RNA_AtomVDWOP : core::scoring::rna
• RNA_AtrRepCheckerCOP : protocols::stepwise::modeler::rna::checker
• RNA_AtrRepCheckerOP : protocols::stepwise::modeler::rna::checker
• RNA_AtrRepScreenerCOP : protocols::stepwise::legacy::screener
• RNA_AtrRepScreenerOP : protocols::stepwise::legacy::screener
• RNA_BaseCentroidCheckerCOP : protocols::stepwise::modeler::rna::checker
• RNA_BaseCentroidCheckerOP : protocols::stepwise::modeler::rna::checker
• RNA_BasePairHandlerCOP : core::import_pose
• RNA_BasePairHandlerOP : core::import_pose
• RNA_BasePairList : core::pose::rna
• RNA_BaseStackList : core::pose::rna
• RNA_BasicOptionsCOP : core::import_pose::options
• RNA_BasicOptionsOP : core::import_pose::options
• RNA_CentroidInfoOP : core::scoring::rna
• RNA_ChainClosableGeometryCheckerCOP : protocols::stepwise::modeler::rna::checker
• RNA_ChainClosableGeometryCheckerOP : protocols::stepwise::modeler::rna::checker
• RNA_ChainClosableGeometryResidueBasedScreenerCOP : protocols::stepwise::screener
• RNA_ChainClosableGeometryResidueBasedScreenerOP : protocols::stepwise::screener
• RNA_ChainClosableGeometryScreenerCOP : protocols::stepwise::screener
• RNA_ChainClosableGeometryScreenerOP : protocols::stepwise::screener
• RNA_ChainClosableGeometryStubBasedScreenerCOP : protocols::stepwise::screener
• RNA_ChainClosableGeometryStubBasedScreenerOP : protocols::stepwise::screener
• RNA_ChainClosureCheckerCOP : protocols::stepwise::modeler::rna::checker
• RNA_ChainClosureCheckerOP : protocols::stepwise::modeler::rna::checker
• RNA_ChainClosureScreenerCOP : protocols::stepwise::screener
• RNA_ChainClosureScreenerOP : protocols::stepwise::screener
• RNA_ChemicalMappingEnergyCOP : core::energy_methods
• RNA_ChemicalMappingEnergyOP : core::energy_methods
• RNA_ChemicalShiftPotentialCOP : core::scoring::rna::chemical_shift
• RNA_ChemicalShiftPotentialOP : core::scoring::rna::chemical_shift
• RNA_ChiStepWiseSamplerOP : protocols::stepwise::sampler::rna
• RNA_ChunkLibraryCOP : core::import_pose::libraries
• RNA_ChunkLibraryOP : core::import_pose::libraries
• RNA_CoarseDistEnergyCOP : core::energy_methods
• RNA_CoarseDistEnergyOP : core::energy_methods
• RNA_CoarsifyCOP : protocols::rna::movers
• RNA_CoarsifyOP : protocols::rna::movers
• RNA_CSA_JobDistributorCOP : protocols::rna::setup
• RNA_CSA_JobDistributorOP : protocols::rna::setup
• RNA_Data : core::pose::rna
• RNA_DataInfoAP : core::pose::rna
• RNA_DataInfoOP : core::pose::rna
• RNA_DataReaderOP : core::io::rna
• RNA_DecoarsifyCOP : protocols::rna::movers
• RNA_DecoarsifyOP : protocols::rna::movers
• RNA_DeNovoJobOutputterOP : protocols::jd2
• RNA_DeNovoMasterMoverCOP : protocols::rna::denovo::movers
• RNA_DeNovoMasterMoverOP : protocols::rna::denovo::movers
• RNA_DeNovoOptimizerCOP : protocols::rna::movers
• RNA_DeNovoOptimizerOP : protocols::rna::movers
• RNA_DeNovoParametersCOP : core::import_pose
• RNA_DeNovoParametersOP : core::import_pose
• RNA_DeNovoPoseInitializerCOP : protocols::rna::denovo
• RNA_DeNovoPoseInitializerOP : protocols::rna::denovo
• RNA_DeNovoProtocolCOP : protocols::rna::denovo
• RNA_DeNovoProtocolMoverCOP : protocols::rna::denovo::movers
• RNA_DeNovoProtocolMoverOP : protocols::rna::denovo::movers
• RNA_DeNovoProtocolOP : protocols::rna::denovo
• RNA_DeNovoProtocolOptionsCOP : core::import_pose::options
• RNA_DeNovoProtocolOptionsOP : core::import_pose::options
• RNA_DeNovoSetupCOP : core::import_pose
• RNA_DeNovoSetupOP : core::import_pose
• RNA_DMS_LowResolutionPotentialCOP : core::scoring::rna::data
• RNA_DMS_LowResolutionPotentialOP : core::scoring::rna::data
• RNA_DMS_PotentialCOP : core::scoring::rna::data
• RNA_DMS_PotentialOP : core::scoring::rna::data
• RNA_EnergyMethodOptionsCOP : core::scoring::rna
• RNA_EnergyMethodOptionsOP : core::scoring::rna
• RNA_FilteredBaseBaseInfoOP : core::pose::rna
• RNA_FittedTorsionInfoOP : core::chemical::rna
• RNA_FragmentHomologyExclusionCOP : core::fragment::rna
• RNA_FragmentHomologyExclusionOP : core::fragment::rna
• RNA_FragmentMonteCarloCOP : protocols::rna::denovo
• RNA_FragmentMonteCarloOP : protocols::rna::denovo
• RNA_FragmentMonteCarloOptionsCOP : core::import_pose::options
• RNA_FragmentMonteCarloOptionsOP : core::import_pose::options
• RNA_FragmentMonteCarloOutputterCOP : protocols::rna::denovo::output
• RNA_FragmentMonteCarloOutputterOP : protocols::rna::denovo::output
• RNA_FragmentMoverOP : protocols::rna::denovo::movers
• RNA_FragmentsCOP : core::fragment::rna
• RNA_FragmentsOP : core::fragment::rna
• RNA_FullAtomVDW_BasePhosphateCOP : core::energy_methods
• RNA_FullAtomVDW_BasePhosphateOP : core::energy_methods
• RNA_HelixAssemblerOP : core::import_pose
• RNA_HelixMoverOP : protocols::rna::denovo::movers
• RNA_IdealCoordOP : core::pose::rna
• RNA_InfoAP : core::chemical::rna
• RNA_InfoCAP : core::chemical::rna
• RNA_InfoCOP : core::chemical::rna
• RNA_InfoOP : core::chemical::rna
• RNA_JobDistributorCOP : protocols::rna::setup
• RNA_JobDistributorOP : protocols::rna::setup
• RNA_JumpLibraryCOP : core::import_pose::libraries
• RNA_JumpLibraryOP : core::import_pose::libraries
• RNA_JumpMoverCOP : core::import_pose
• RNA_JumpMoverOP : core::import_pose
• RNA_KIC_SamplerOP : protocols::stepwise::sampler::rna
• RNA_KinematicCloserOP : protocols::stepwise::sampler::rna
• RNA_LibraryManagerCOP : core::import_pose::libraries
• RNA_LibraryManagerOP : core::import_pose::libraries
• RNA_LoopCloserCOP : protocols::rna::movers
• RNA_LoopCloserOP : protocols::rna::movers
• RNA_LowResolutionPotentialCOP : core::scoring::rna
• RNA_LowResolutionPotentialOP : core::scoring::rna
• RNA_MinimizerOP : protocols::rna::denovo::movers
• RNA_MinimizerOptionsCOP : core::import_pose::options
• RNA_MinimizerOptionsOP : core::import_pose::options
• RNA_MonteCarloJobDistributorCOP : protocols::rna::setup
• RNA_MonteCarloJobDistributorOP : protocols::rna::setup
• RNA_MotifCOP : core::scoring::rna
• RNA_MotifOP : core::scoring::rna
• RNA_MotifsCOP : core::scoring::rna
• RNA_MotifsOP : core::scoring::rna
• RNA_NucleosideStepWiseSamplerOP : protocols::stepwise::sampler::rna
• RNA_O2PrimeMoverOP : protocols::stepwise::monte_carlo::rna
• RNA_PairingTemplateList : core::import_pose::libraries
• RNA_PairingTemplateMap : core::import_pose::libraries
• RNA_PairingTemplateOP : core::import_pose::libraries
• RNA_RawBaseBaseInfoAP : core::pose::rna
• RNA_RawBaseBaseInfoOP : core::pose::rna
• RNA_Reactivities : core::pose::rna
• RNA_ReactivityAP : core::pose::rna
• RNA_ReactivityOP : core::pose::rna
• RNA_RelaxerOP : protocols::rna::denovo::movers
• RNA_ResidueLevelTaskCOP : core::pack::task::rna
• RNA_ResidueLevelTaskOP : core::pack::task::rna
• RNA_ScoringInfoOP : core::scoring::rna
• RNA_SecStructCOP : core::pose::rna
• RNA_SecStructLegacyInfoOP : core::pose::rna::secstruct_legacy
• RNA_SecStructOP : core::pose::rna
• RNA_SilentStructOP : core::io::silent
• RNA_SugarCloseEnergyCOP : core::energy_methods
• RNA_SugarCloseEnergyOP : core::energy_methods
• RNA_SugarStepWiseSamplerOP : protocols::stepwise::sampler::rna
• RNA_SuiteNameOP : core::pose::rna
• RNA_SuitePotentialCOP : core::scoring::rna
• RNA_SuitePotentialOP : core::scoring::rna
• RNA_SuiteStepWiseSamplerOP : protocols::stepwise::sampler::rna
• RNA_TorsionEnergyCOP : core::energy_methods
• RNA_TorsionEnergyOP : core::energy_methods
• RNA_TorsionMoverOP : protocols::stepwise::monte_carlo::rna
• RNA_TorsionPotentialCOP : core::scoring::rna
• RNA_TorsionPotentialOP : core::scoring::rna
• RNA_TorsionScreenerOP : protocols::stepwise::sampler::screener
• RNA_VDW_BinCheckerCOP : protocols::stepwise::modeler::rna::checker
• RNA_VDW_BinCheckerOP : protocols::stepwise::modeler::rna::checker
• RNAIdealizeMoverCOP : protocols::rna::movers
• RNAIdealizeMoverOP : protocols::rna::movers
• RNAThreadAndMinimizeMoverCOP : protocols::rna::movers
• RNAThreadAndMinimizeMoverOP : protocols::rna::movers
• RNP_HighResMoverOP : protocols::rna::denovo::movers
• RNP_LowResPairDistPotentialOP : core::scoring::rna
• RNP_LowResPotentialOP : core::scoring::rna
• RNP_LowResStackDataOP : core::scoring::rna
• RollMoverCOP : protocols::rigid
• RollMoverOP : protocols::rigid
• ROMolOP : RDKit
• RosettaScriptsParserCOP : protocols::rosetta_scripts
• RosettaScriptsParserOP : protocols::rosetta_scripts
• Rot : core::scoring::packstat
• rot_matrix : protocols::splice
• RotamerAssigningAnnealerOP : core::pack::annealer
• RotamerBin : core::pack::rotamer_set
• RotamerBins : core::pack::rotamer_set
• RotamerBoltzCalculatorCOP : protocols::pose_metric_calculators
• RotamerBoltzCalculatorOP : protocols::pose_metric_calculators
• RotamerBoltzmannWeight2COP : protocols::calc_taskop_filters
• RotamerBoltzmannWeight2OP : protocols::calc_taskop_filters
• RotamerBoltzmannWeightFeaturesCOP : protocols::features
• RotamerBoltzmannWeightFeaturesOP : protocols::features
• RotamerBoltzmannWeightFilterCOP : protocols::calc_taskop_filters
• RotamerBoltzmannWeightFilterOP : protocols::calc_taskop_filters
• RotamerConstraintCOP : core::pack::dunbrack
• RotamerConstraintOP : core::pack::dunbrack
• RotamerCouplingsCOP : core::pack::rotamer_set
• RotamerCouplingsOP : core::pack::rotamer_set
• RotamerDNAHBondFilterOP : protocols::dna
• RotamerDotsCOP : core::pack::interaction_graph
• RotamerDotsOP : core::pack::interaction_graph
• RotamerExplosionOP : core::pack::task::operation
• RotamerFeaturesCOP : protocols::features
• RotamerFeaturesOP : protocols::features
• RotamericSingleResidueDunbrackLibraryParserCOP : core::pack::dunbrack
• RotamericSingleResidueDunbrackLibraryParserOP : core::pack::dunbrack
• RotamerIDSize : core::scoring::hbonds::graph
• RotamerizeMoverCOP : protocols::minimization_packing
• RotamerizeMoverOP : protocols::minimization_packing
• RotamerLibraryCOP : core::pack::dunbrack
• RotamerLibraryOP : core::pack::dunbrack
• RotamerLibraryScratchSpaceCOP : core::pack::dunbrack
• RotamerLibraryScratchSpaceOP : core::pack::dunbrack
• RotamerLibrarySpecificationCOP : core::chemical::rotamers
• RotamerLibrarySpecificationCreatorCOP : core::chemical::rotamers
• RotamerLibrarySpecificationCreatorOP : core::chemical::rotamers
• RotamerLibrarySpecificationOP : core::chemical::rotamers
• RotamerLinksCOP : core::pack::rotamer_set
• RotamerLinksOP : core::pack::rotamer_set
• RotamerOperationCOP : core::pack::rotamer_set
• RotamerOperationOP : core::pack::rotamer_set
• RotamerOperations : core::pack::rotamer_set
• RotamerProbabilities : protocols::pose_metric_calculators
• RotamerProbability : protocols::pose_metric_calculators
• RotamerRecoveryCOP : protocols::rotamer_recovery
• RotamerRecoveryFactoryCOP : protocols::rotamer_recovery
• RotamerRecoveryFactoryOP : protocols::rotamer_recovery
• RotamerRecoveryFeaturesCOP : protocols::features
• RotamerRecoveryFeaturesOP : protocols::features
• RotamerRecoveryMoverCOP : protocols::rotamer_recovery
• RotamerRecoveryMoverOP : protocols::rotamer_recovery
• RotamerRecoveryOP : protocols::rotamer_recovery
• RotamerReporterCOP : protocols::rotamer_recovery
• RotamerReporterSimpleCOP : protocols::rotamer_recovery
• RotamerReporterSQLiteCOP : protocols::rotamer_recovery
• Rotamers : core::pack::rotamer_set
• RotamerSetBaseCOP : core::conformation
• RotamerSetBaseOP : core::conformation
• RotamerSetCOP : core::pack::rotamer_set
• RotamerSetFactoryOP : core::pack::rotamer_set
• RotamerSetOP : core::pack::rotamer_set
• RotamerSetOperationCOP : core::pack::rotamer_set
• RotamerSetOperationOP : core::pack::rotamer_set
• RotamerSetsBaseCOP : core::pack_basic
• RotamerSetsBaseOP : core::pack_basic
• RotamerSetsCOP : core::pack::rotamer_set
• RotamerSetsFactoryOP : core::pack::rotamer_set
• RotamerSetsOP : core::pack::rotamer_set
• RotamerSetsOperationCOP : core::pack::rotamer_set
• RotamerSetsOperationOP : core::pack::rotamer_set
• RotamerSetVector : core::pack::rotamer_set::symmetry
• RotamerSubsetsCOP : core::pack::rotamer_set
• RotamerSubsetsOP : core::pack::rotamer_set
• RotamerTrialsMinMoverCOP : protocols::minimization_packing
• RotamerTrialsMinMoverOP : protocols::minimization_packing
• RotamerTrialsMoverCOP : protocols::minimization_packing
• RotamerTrialsMoverOP : protocols::minimization_packing
• RotamerTrialsRefinerCOP : protocols::loop_modeling::refiners
• RotamerTrialsRefinerOP : protocols::loop_modeling::refiners
• RotamerTrieBaseCOP : core::scoring::trie
• RotamerTrieBaseOP : core::scoring::trie
• RotamerVector : core::pack::rotamers
• RotateCOP : protocols::ligand_docking
• RotateCOPs : protocols::ligand_docking
• RotateJumpAxisMoverCOP : protocols::rigid
• RotateJumpAxisMoverOP : protocols::rigid
• RotateOP : protocols::ligand_docking
• RotateOPs : protocols::ligand_docking
• RotatesCOP : protocols::ligand_docking
• RotatesCOPs : protocols::ligand_docking
• RotateSegmentMoverCOP : protocols::denovo_design::movers
• RotateSegmentMoverOP : protocols::denovo_design::movers
• RotatesOP : protocols::ligand_docking
• RotatesOPs : protocols::ligand_docking
• RotationMoverCOP : protocols::membrane
• RotationMoverOP : protocols::membrane
• RotDataVec : protocols::make_rot_lib
• RotLibdbCOP : protocols::splice
• RotLibdbOP : protocols::splice
• RotLibOutCOP : protocols::splice
• RotLibOutOP : protocols::splice
• RotMatrixCOP : protocols::mean_field
• RotMatrixOP : protocols::mean_field
• RotPair : core::scoring::packstat
• RotSetOperationList : core::pack::rotamer_set
• RotSetOperationListIterator : core::pack::rotamer_set
• RotSetsOperationList : core::pack::rotamer_set
• RotSetsOperationListIterator : core::pack::rotamer_set
• RotVec : protocols::make_rot_lib
• RotVector : core::pack::dunbrack
• RRComparerAutomorphicRMSDCOP : protocols::rotamer_recovery
• RRComparerAutomorphicRMSDOP : protocols::rotamer_recovery
• RRComparerChiDiffCOP : protocols::rotamer_recovery
• RRComparerChiDiffOP : protocols::rotamer_recovery
• RRComparerCOP : protocols::rotamer_recovery
• RRComparerCreatorCOP : protocols::rotamer_recovery
• RRComparerCreatorOP : protocols::rotamer_recovery
• RRComparerElecDensDiffCOP : protocols::rotamer_recovery
• RRComparerElecDensDiffOP : protocols::rotamer_recovery
• RRComparerOP : protocols::rotamer_recovery
• RRComparerRotBinsCOP : protocols::rotamer_recovery
• RRComparerRotBinsOP : protocols::rotamer_recovery
• RRProtocolCOP : protocols::rotamer_recovery
• RRProtocolCreatorCOP : protocols::rotamer_recovery
• RRProtocolCreatorOP : protocols::rotamer_recovery
• RRProtocolMinPackCOP : protocols::rotamer_recovery
• RRProtocolMinPackOP : protocols::rotamer_recovery
• RRProtocolMoverCOP : protocols::rotamer_recovery
• RRProtocolMoverOP : protocols::rotamer_recovery
• RRProtocolOP : protocols::rotamer_recovery
• RRProtocolPackRotamersCOP : protocols::rotamer_recovery
• RRProtocolPackRotamersOP : protocols::rotamer_recovery
• RRProtocolReferenceStructureCOP : protocols::rotamer_recovery
• RRProtocolReferenceStructureOP : protocols::rotamer_recovery
• RRProtocolRelaxCOP : protocols::rotamer_recovery
• RRProtocolRelaxOP : protocols::rotamer_recovery
• RRProtocolRotamerTrialsCOP : protocols::rotamer_recovery
• RRProtocolRotamerTrialsOP : protocols::rotamer_recovery
• RRProtocolRTMinCOP : protocols::rotamer_recovery
• RRProtocolRTMinOP : protocols::rotamer_recovery
• RRReporterCreatorCOP : protocols::rotamer_recovery
• RRReporterCreatorOP : protocols::rotamer_recovery
• RRReporterHumanCOP : protocols::rotamer_recovery
• RRReporterHumanOP : protocols::rotamer_recovery
• RRReporterOP : protocols::rotamer_recovery
• RRReporterSimpleOP : protocols::rotamer_recovery
• RRReporterSQLiteOP : protocols::rotamer_recovery
• RTAP : core::kinematics
• RTConstraintCOP : core::scoring::constraints
• RTConstraintOP : core::scoring::constraints
• RTOP : core::kinematics
• RunSimpleMetricsMoverCOP : protocols::analysis::simple_metrics
• RunSimpleMetricsMoverOP : protocols::analysis::simple_metrics
• RuntimeFeaturesCOP : protocols::features
• RuntimeFeaturesOP : protocols::features
• rvec : core::scoring , protocols::toolbox
• rvec5 : core::scoring
• RWMolOP : RDKit