- s -

SaltBridgeFeaturesCOP : protocols::features
SaltBridgeFeaturesOP : protocols::features
SameChiBinComboGrouperCOP : protocols::match::output
SameChiBinComboGrouperOP : protocols::match::output
SameRotamerComboGrouperCOP : protocols::match::output
SameRotamerComboGrouperOP : protocols::match::output
SameSequenceAndDSPositionGrouperCOP : protocols::match::output
SameSequenceAndDSPositionGrouperOP : protocols::match::output
SameSequenceGrouperCOP : protocols::match::output
SameSequenceGrouperOP : protocols::match::output
SameStrandCOP : protocols::jumping
SameStrandOP : protocols::jumping
SampleApplierCOP : protocols::stepwise::screener
SampleApplierOP : protocols::stepwise::screener
SampleFarnesylMoverCOP : protocols::farnesyl
SampleFarnesylMoverOP : protocols::farnesyl
SampleGridCOP : protocols::magnesium
SampleGridOP : protocols::magnesium
SampleRotamersFromPDB_RotamerSetOperationCOP : protocols::splice
SampleRotamersFromPDB_RotamerSetOperationOP : protocols::splice
SampleRotamersFromPDBCOP : protocols::splice
SampleRotamersFromPDBOP : protocols::splice
SamplerPlusPlusOP : protocols::toolbox
SampleTiltAnglesCOP : protocols::membrane::benchmark
SampleTiltAnglesOP : protocols::membrane::benchmark
SandwichFeaturesCOP : protocols::features::strand_assembly
SandwichFeaturesOP : protocols::features::strand_assembly
SaneDockingProtocolOP : protocols::docking::stateless
SaneMinMoverCOP : protocols::minimization_packing
SaneMinMoverOP : protocols::minimization_packing
SapConstraintCOP : core::pack::guidance_scoreterms::sap
SapConstraintEnergyOP : core::pack::guidance_scoreterms::sap
SapConstraintHelperCOP : core::pack::guidance_scoreterms::sap
SapConstraintHelperOP : core::pack::guidance_scoreterms::sap
SapConstraintOP : core::pack::guidance_scoreterms::sap
SapConstraintOptionsCOP : core::pack::guidance_scoreterms::sap
SapConstraintOptionsOP : core::pack::guidance_scoreterms::sap
SapDatabaseCOP : core::pack::guidance_scoreterms::sap
SapDatabaseOP : core::pack::guidance_scoreterms::sap
SapMathConstraintCOP : core::pack::guidance_scoreterms::sap
SapMathConstraintOP : core::pack::guidance_scoreterms::sap
SapScoreMetricCOP : core::pack::guidance_scoreterms::sap
SapScoreMetricOP : core::pack::guidance_scoreterms::sap
SasaCalcCOP : core::scoring::sasa
SasaCalcOP : core::scoring::sasa
SasaMethodCOP : core::scoring::sasa
SasaMethodOP : core::scoring::sasa
SasaMetricCOP : core::simple_metrics::metrics
SasaMetricOP : core::simple_metrics::metrics
SasaOptionsOP : core::scoring::packstat
SASAPotentialCOP : core::scoring
SASAPotentialOP : core::scoring
SasaResultOP : core::scoring::packstat
SaveAndRetrieveSidechainsCOP : protocols::protein_interface_design::movers
SaveAndRetrieveSidechainsOP : protocols::protein_interface_design::movers
SavePDBInfoMoverCOP : protocols::fold_from_loops::movers
SavePDBInfoMoverOP : protocols::fold_from_loops::movers
SavePoseMoverCOP : protocols::rosetta_scripts
SavePoseMoverOP : protocols::rosetta_scripts
SaveResfileToDiskFilterCOP : protocols::simple_filters
SaveResfileToDiskFilterOP : protocols::simple_filters
SaveSequenceToCommentsMoverCOP : protocols::movers
SaveSequenceToCommentsMoverOP : protocols::movers
SAXSScoreFilterCOP : protocols::simple_filters
SAXSScoreFilterOP : protocols::simple_filters
ScaffoldBuildPointCOP : protocols::match::upstream
ScaffoldBuildPointOP : protocols::match::upstream
ScalarWeightedFuncCOP : core::scoring::func
ScalarWeightedFuncOP : core::scoring::func
SchemePlaceMotifsMoverCOP : protocols::matdes
SchemePlaceMotifsMoverOP : protocols::matdes
SCMinMinimizerMapCOP : core::pack::scmin
SCMinMinimizerMapOP : core::pack::scmin
SCMinMultifuncCOP : core::pack::scmin
SCMinMultifuncOP : core::pack::scmin
Score : core::scoring
ScoreCacheCOP : core::energy_methods
ScoreCacheOP : core::energy_methods
ScoreCutoffFilterCOP : protocols::score_filters
ScoreCutoffFilterOP : protocols::score_filters
ScoredCandidate : protocols::frag_picker
ScoredCandidatesVector1 : protocols::frag_picker
ScoreFileOutputSpecificationCOP : protocols::jd3::pose_outputters
ScoreFileOutputSpecificationOP : protocols::jd3::pose_outputters
ScoreFileOutputterCOP : protocols::jd3::pose_outputters
ScoreFileOutputterOP : protocols::jd3::pose_outputters
ScoreFunctionCOP : core::scoring
ScoreFunctionFeaturesCOP : protocols::features
ScoreFunctionFeaturesOP : protocols::features
ScoreFunctionInfoCOP : core::scoring
ScoreFunctionInfoOP : core::scoring
ScoreFunctionOP : core::scoring
ScoreJumpFileSilentStructOP : core::io::silent
ScoreList : protocols::nonlocal , protocols::simple_moves
ScoreMap : protocols::qsar::scoring_grid
ScoreMoverCOP : protocols::simple_moves
ScoreMoverOP : protocols::simple_moves
ScoreNormalizationCOP : protocols::qsar::scoring_grid
ScoreNormalizationOP : protocols::qsar::scoring_grid
ScorePair : core::import_pose::atom_tree_diffs
ScorePoseSegmentFromResidueSelectorFilterCOP : protocols::fold_from_loops::filters
ScorePoseSegmentFromResidueSelectorFilterOP : protocols::fold_from_loops::filters
ScorerCOP : protocols::stepwise::screener
ScoreResult : protocols::legacy_sewing
ScoreResults : protocols::legacy_sewing
ScoreRmsPointCOP : protocols::toolbox
ScoreRmsPointOP : protocols::toolbox
ScoreRmsPointsCOP : protocols::toolbox
ScoreRmsPointsOP : protocols::toolbox
ScorerOP : protocols::stepwise::screener
Scores : core::import_pose::atom_tree_diffs , protocols::sic_dock , protocols::sic_dock::scores
ScoresPair : core::import_pose::atom_tree_diffs
ScoresPairList : core::import_pose::atom_tree_diffs
ScoreStructOP : core::io::raw_data
ScoreTermValueBasedSelectorCOP : core::select::residue_selector
ScoreTermValueBasedSelectorOP : core::select::residue_selector
ScoreTypeFeaturesCOP : protocols::features
ScoreTypeFeaturesOP : protocols::features
ScoreTypeFilterCOP : protocols::score_filters
ScoreTypeFilterOP : protocols::score_filters
ScoreTypes : core::scoring
ScoringGridLoaderCOP : protocols::qsar::scoring_grid
ScoringGridLoaderOP : protocols::qsar::scoring_grid
ScoringSchemeOP : core::sequence
ScoringSecMatchRPECOP : protocols::match::downstream
ScoringSecMatchRPEOP : protocols::match::downstream
ScreeningFeaturesCOP : protocols::features
ScreeningFeaturesOP : protocols::features
ScreeningJobInputterOP : protocols::jd2
ScriptCMCOP : protocols::environment
ScriptCMOP : protocols::environment
SCS_Antibody_Database_ResultCOP : protocols::antibody::grafting
SCS_Antibody_Database_ResultOP : protocols::antibody::grafting
SCS_BaseCOP : protocols::antibody::grafting
SCS_BaseOP : protocols::antibody::grafting
SCS_BlastPlusCOP : protocols::antibody::grafting
SCS_BlastPlusOP : protocols::antibody::grafting
SCS_BlastResultCOP : protocols::antibody::grafting
SCS_BlastResultOP : protocols::antibody::grafting
SCS_FunctorCOP : protocols::antibody::grafting
SCS_FunctorOP : protocols::antibody::grafting
SCS_LoopOverSCsCOP : protocols::antibody::grafting
SCS_LoopOverSCsOP : protocols::antibody::grafting
SCS_ResultCOP : protocols::antibody::grafting
SCS_ResultOP : protocols::antibody::grafting
SCS_ResultsCOP : protocols::antibody::grafting
SCS_ResultSetCOP : protocols::antibody::grafting
SCS_ResultSetOP : protocols::antibody::grafting
SCS_ResultsOP : protocols::antibody::grafting
SCS_SubstitutionMatrixResultCOP : protocols::antibody::grafting
SCS_SubstitutionMatrixResultOP : protocols::antibody::grafting
SealFoldTreeMoverCOP : protocols::denovo_design::movers
SealFoldTreeMoverOP : protocols::denovo_design::movers
SearchPatternCOP : protocols::hotspot_hashing
SearchPatternOP : protocols::hotspot_hashing
SearchPatternRotSetOpCOP : protocols::hotspot_hashing
SearchPatternRotSetOpOP : protocols::hotspot_hashing
SearchReal : protocols::indexed_structure_store::search
SecMatchResiduePairEvaluatorCOP : protocols::match::downstream
SecMatchResiduePairEvaluatorOP : protocols::match::downstream
SecondaryMatcherToDownstreamResidueCOP : protocols::match::downstream
SecondaryMatcherToDownstreamResidueOP : protocols::match::downstream
SecondaryMatcherToUpstreamResidueCOP : protocols::match::downstream
SecondaryMatcherToUpstreamResidueOP : protocols::match::downstream
SecondaryMatchProtocolCAP : protocols::enzdes
SecondaryMatchProtocolCOP : protocols::enzdes
SecondaryMatchProtocolOP : protocols::enzdes
SecondaryMatchUpstreamResProcessorCOP : protocols::match::downstream
SecondaryMatchUpstreamResProcessorOP : protocols::match::downstream
SecondaryOutputterMap : protocols::jd3::standard
SecondaryPoseOutputterCOP : protocols::jd3::pose_outputters
SecondaryPoseOutputterCreatorCOP : protocols::jd3::pose_outputters
SecondaryPoseOutputterCreatorOP : protocols::jd3::pose_outputters
SecondaryPoseOutputterOP : protocols::jd3::pose_outputters
SecondaryRepresentativeOutputterMap : protocols::jd3::standard
SecondarySimilarityCOP : protocols::frag_picker::scores
SecondarySimilarityOP : protocols::frag_picker::scores
SecondaryStructureCOP : core::fragment
SecondaryStructureCountFilterCOP : protocols::fldsgn::filters
SecondaryStructureCountFilterOP : protocols::fldsgn::filters
SecondaryStructureFilterCOP : protocols::fldsgn::filters
SecondaryStructureFilterOP : protocols::fldsgn::filters
SecondaryStructureHasResidueFilterCOP : protocols::fldsgn::filters
SecondaryStructureHasResidueFilterOP : protocols::fldsgn::filters
SecondaryStructureMetricCOP : core::simple_metrics::metrics
SecondaryStructureMetricOP : core::simple_metrics::metrics
SecondaryStructureOP : core::fragment
SecondaryStructurePoolCOP : protocols::frag_picker::quota
SecondaryStructurePoolOP : protocols::frag_picker::quota
SecondaryStructurePotentialCOP : core::scoring
SecondaryStructurePotentialOP : core::scoring
SecondaryStructureSegmentFeaturesCOP : protocols::features
SecondaryStructureSegmentFeaturesOP : protocols::features
SecondaryStructureSelectorCOP : core::select::residue_selector
SecondaryStructureSelectorOP : core::select::residue_selector
SecretionPredictionFilterCOP : protocols::simple_filters
SecretionPredictionFilterOP : protocols::simple_filters
SecStructFinderCOP : protocols::ncbb
SecStructFinderCreatorCOP : protocols::ncbb
SecStructFinderCreatorOP : protocols::ncbb
SecStructFinderOP : protocols::ncbb
SecStructGenAP : core::fragment::picking_old::vall::gen
SecStructGenCAP : core::fragment::picking_old::vall::gen
SecStructGenCOP : core::fragment::picking_old::vall::gen
SecStructGenOP : core::fragment::picking_old::vall::gen
SecStructMinimizeMoverCOP : protocols::ncbb
SecStructMinimizeMoverCreatorCOP : protocols::ncbb
SecStructMinimizeMoverCreatorOP : protocols::ncbb
SecStructMinimizeMoverOP : protocols::ncbb
SeedFoldTreeCOP : protocols::seeded_abinitio
SeedFoldTreeOP : protocols::seeded_abinitio
SegmentAP : protocols::denovo_design::components
SegmentCAP : protocols::denovo_design::components
SegmentContactOrderScorerCOP : protocols::sewing::scoring
SegmentContactOrderScorerCreatorCOP : protocols::sewing::scoring
SegmentContactOrderScorerCreatorOP : protocols::sewing::scoring
SegmentContactOrderScorerOP : protocols::sewing::scoring
SegmentCOP : protocols::denovo_design::components
SegmentCOPs : protocols::denovo_design::components
SegmentedAtomPairConstraintGeneratorCOP : protocols::fold_from_loops::constraint_generator
SegmentedAtomPairConstraintGeneratorOP : protocols::fold_from_loops::constraint_generator
SegmentGraph : protocols::features
SegmentInsertAP : protocols::forge::build
SegmentInsertCAP : protocols::forge::build
SegmentInsertCOP : protocols::forge::build
SegmentInsertOP : protocols::forge::build
SegmentMap : protocols::denovo_design::components
SegmentName : protocols::denovo_design
SegmentNameList : protocols::denovo_design
SegmentNames : protocols::denovo_design
SegmentNameSet : protocols::denovo_design
SegmentOP : protocols::denovo_design::components
SegmentOPs : protocols::denovo_design::components
SegmentPair : protocols::denovo_design::components , protocols::legacy_sewing
SegmentPairingCOP : protocols::denovo_design::components
SegmentPairingCOPs : protocols::denovo_design::components
SegmentPairingOP : protocols::denovo_design::components
SegmentPairingOPs : protocols::denovo_design::components
SegmentRebuildAP : protocols::forge::build
SegmentRebuildCAP : protocols::forge::build
SegmentRebuildCOP : protocols::forge::build
SegmentRebuildOP : protocols::forge::build
SegmentResid : protocols::denovo_design::architects , protocols::denovo_design::components
SegmentSequenceProfileMoverCOP : protocols::indexed_structure_store::movers
SegmentSequenceProfileMoverOP : protocols::indexed_structure_store::movers
SegmentSwapAP : protocols::forge::build
SegmentSwapCAP : protocols::forge::build
SegmentSwapCOP : protocols::forge::build
SegmentSwapOP : protocols::forge::build
SegmentVectorCOP : protocols::sewing::hashing
SegmentVectorOP : protocols::sewing::hashing
SegmentVertex : protocols::features
SelectByDeltaScoreOperationOP : protocols::task_operations
SelectByDensityFitOperationCOP : protocols::task_operations
SelectByDensityFitOperationOP : protocols::task_operations
SelectBySASAOperationCOP : protocols::task_operations
SelectBySASAOperationOP : protocols::task_operations
SelectedResidueCountMetricCOP : core::simple_metrics::metrics
SelectedResidueCountMetricOP : core::simple_metrics::metrics
SelectedResiduesMetricCOP : core::simple_metrics::metrics
SelectedResiduesMetricOP : core::simple_metrics::metrics
SelectedResiduesPyMOLMetricCOP : core::simple_metrics::metrics
SelectedResiduesPyMOLMetricOP : core::simple_metrics::metrics
SelectorLogicParserCOP : core::select::residue_selector
SelectorLogicParserOP : core::select::residue_selector
SelectRDC_EvaluatorCOP : protocols::simple_filters
SelectRDC_EvaluatorOP : protocols::simple_filters
SelectResiduesByLayerCOP : core::select::util
SelectResiduesByLayerOP : core::select::util
SelectResiduesWithinChainOperationCOP : protocols::task_operations
SelectResiduesWithinChainOperationOP : protocols::task_operations
SeparateDnaFromNonDnaCOP : protocols::dna
SeparateDnaFromNonDnaOP : protocols::dna
SeqprofConsensusOperationOP : protocols::task_operations
SequenceAlignmentCOP : core::sequence
SequenceAlignmentOP : core::sequence
SequenceAnnotationCOP : core::environment
SequenceAnnotationOP : core::environment
SequenceClaimAP : protocols::topology_broker::claims
SequenceClaimCAP : protocols::topology_broker::claims
SequenceClaimCOP : protocols::topology_broker::claims
SequenceClaimerAP : protocols::topology_broker
SequenceClaimerCAP : protocols::topology_broker
SequenceClaimerCOP : protocols::topology_broker
SequenceClaimerOP : protocols::topology_broker
SequenceClaimOP : protocols::topology_broker::claims
SequenceClaims : protocols::topology_broker::claims
SequenceConstraintCOP : core::scoring::aa_composition_energy
SequenceConstraintOP : core::scoring::aa_composition_energy
SequenceCOP : core::sequence
SequenceCoupling1BDConstraintCOP : protocols::constraints_additional
SequenceCoupling1BDConstraintOP : protocols::constraints_additional
SequenceCouplingConstraintCOP : protocols::constraints_additional
SequenceCouplingConstraintOP : protocols::constraints_additional
SequenceCouplingCOP : core::sequence
SequenceCouplingOP : core::sequence
SequenceCreatorCOP : core::sequence
SequenceCreatorOP : core::sequence
SequenceDependentRefEnergyCOP : core::energy_methods
SequenceDependentRefEnergyOP : core::energy_methods
SequenceFactoryOP : core::io::silent
SequenceMapping : protocols::stepwise::monte_carlo::submotif
SequenceMappingCOP : core::id
SequenceMappingOP : core::id
SequenceMetricCOP : core::simple_metrics::metrics , protocols::multistage_rosetta_scripts::cluster::metrics
SequenceMetricOP : core::simple_metrics::metrics , protocols::multistage_rosetta_scripts::cluster::metrics
SequenceMotifTaskOperationCOP : protocols::task_operations
SequenceMotifTaskOperationOP : protocols::task_operations
SequenceMoverCOP : protocols::moves
SequenceMoverOP : protocols::moves
SequenceNumberResolverAP : protocols::topology_broker
SequenceNumberResolverCAP : protocols::topology_broker
SequenceNumberResolverCOP : protocols::topology_broker
SequenceNumberResolverOP : protocols::topology_broker
SequenceOP : core::sequence
SequenceProfileConstraintCOP : core::scoring::constraints
SequenceProfileConstraintOP : core::scoring::constraints
SequenceProfileCOP : core::sequence
SequenceProfileMoverCOP : protocols::simple_moves
SequenceProfileMoverOP : protocols::simple_moves
SequenceProfileOP : core::sequence
SequenceRecoveryFilterCOP : protocols::protein_interface_design::filters
SequenceRecoveryFilterOP : protocols::protein_interface_design::filters
SequenceRecoveryMetricCOP : protocols::analysis::simple_metrics
SequenceRecoveryMetricOP : protocols::analysis::simple_metrics
SequenceScores : protocols::dna
SequenceSecStructPair : protocols::rna::denovo::coarse
SequenceSimilarityMetricCOP : core::simple_metrics::metrics
SequenceSimilarityMetricOP : core::simple_metrics::metrics
SequenceSymmetricAnnealerOP : core::pack::annealer
SequentialSymmetrySliderCOP : protocols::symmetry
SequentialSymmetrySliderOP : protocols::symmetry
SerializedLoopList : protocols::loops
SerializedPoseJobInputterOP : protocols::jd2
SerializedPoseJobOutputterOP : protocols::jd2
SeriesJacobiansCOP : core::kinematics::jacobian
SeriesJacobiansOP : core::kinematics::jacobian
SetAACompositionPotential_AP : protocols::fldsgn
SetAACompositionPotential_CAP : protocols::fldsgn
SetAACompositionPotential_COP : protocols::fldsgn
SetAACompositionPotential_OP : protocols::fldsgn
SetCatalyticResPackBehaviorCOP : protocols::enzdes
SetCatalyticResPackBehaviorOP : protocols::enzdes
SetChiMoverCOP : protocols::simple_moves::sidechain_moves
SetChiMoverOP : protocols::simple_moves::sidechain_moves
SetIGTypeOperationCOP : protocols::task_operations
SetIGTypeOperationOP : protocols::task_operations
SetMembraneCenterMoverCOP : protocols::membrane
SetMembraneCenterMoverOP : protocols::membrane
SetMembraneNormalMoverCOP : protocols::membrane
SetMembraneNormalMoverOP : protocols::membrane
SetMembranePositionMoverCOP : protocols::membrane
SetMembranePositionMoverOP : protocols::membrane
SetResidueAliasMoverCOP : protocols::denovo_design::movers
SetResidueAliasMoverOP : protocols::denovo_design::movers
SetReturningPackRotamersMoverCOP : protocols::minimization_packing
SetReturningPackRotamersMoverOP : protocols::minimization_packing
SetRotamerCouplingsOP : core::pack::task::operation
SetRotamerLinksOP : core::pack::task::operation
SetSecStructEnergies_AP : protocols::fldsgn::potentials
SetSecStructEnergies_CAP : protocols::fldsgn::potentials
SetSecStructEnergies_COP : protocols::fldsgn::potentials
SetSecStructEnergies_OP : protocols::fldsgn::potentials
SetTemperatureFactorCOP : protocols::protein_interface_design::movers
SetTemperatureFactorOP : protocols::protein_interface_design::movers
SetTorsionCOP : protocols::simple_moves
SetTorsionOP : protocols::simple_moves
SetupForDensityScoringMoverOP : protocols::electron_density
SetupForFibrilMoverCOP : protocols::fibril
SetupForFibrilMoverOP : protocols::fibril
SetupForSequenceSymmetryMoverCOP : protocols::symmetry
SetupForSequenceSymmetryMoverOP : protocols::symmetry
SetupForSymmetryMoverCOP : protocols::symmetry
SetupForSymmetryMoverOP : protocols::symmetry
SetupHotspotConstraintsLoopsMoverCOP : protocols::protein_interface_design::movers
SetupHotspotConstraintsLoopsMoverOP : protocols::protein_interface_design::movers
SetupHotspotConstraintsMoverCOP : protocols::protein_interface_design::movers
SetupHotspotConstraintsMoverOP : protocols::protein_interface_design::movers
SetupMetalsMoverCOP : protocols::simple_moves
SetupMetalsMoverOP : protocols::simple_moves
SetupNCSMoverCOP : protocols::symmetry
SetupNCSMoverOP : protocols::symmetry
SetupPB : protocols::pb_potential
SetupPBCreator : protocols::pb_potential
SetupPoissonBoltzmannPotentialAP : core::scoring
SetupPoissonBoltzmannPotentialCAP : core::scoring
SetupPoissonBoltzmannPotentialCOP : core::scoring
SetupPoissonBoltzmannPotentialOP : core::scoring
SewGraphCOP : protocols::legacy_sewing
SewGraphOP : protocols::legacy_sewing
SewSegmentCOP : protocols::legacy_sewing
SewSegmentOP : protocols::legacy_sewing
SF_ReplicaCOP : protocols::toolbox
SF_ReplicaOP : protocols::toolbox
SG_Dist_FuncOP : core::scoring::disulfides
SGSG_Dihedral_FuncOP : core::scoring::disulfides
ShakeStructureMoverCOP : protocols::simple_moves
ShakeStructureMoverOP : protocols::simple_moves
ShapeComplementarityCalculatorCOP : core::scoring::sc
ShapeComplementarityCalculatorOP : core::scoring::sc
ShapeComplementarityFilterCOP : protocols::simple_filters
ShapeComplementarityFilterOP : protocols::simple_filters
ShapeSimilarityCalculatorCOP : core::scoring::sc
ShapeSimilarityCalculatorOP : core::scoring::sc
ShapeSimilarityMetricCOP : core::simple_metrics::metrics
ShapeSimilarityMetricOP : core::simple_metrics::metrics
SharedSilentDataOP : core::io::silent
ShearFreePeptideMoverCOP : protocols::backbone_moves::local_backbone_mover::free_peptide_movers
ShearFreePeptideMoverOP : protocols::backbone_moves::local_backbone_mover::free_peptide_movers
ShearMinCCDTrialCOP : protocols::loops::loop_mover::refine
ShearMinCCDTrialOP : protocols::loops::loop_mover::refine
ShearMoverCOP : protocols::simple_moves
ShearMoverOP : protocols::simple_moves
SheetConstraintGeneratorCOP : protocols::fldsgn
SheetConstraintGeneratorOP : protocols::fldsgn
SheetCOP : protocols::fldsgn::topology
SheetDBAP : protocols::denovo_design::components
SheetDBCAP : protocols::denovo_design::components
SheetDBCOP : protocols::denovo_design::components
SheetDBOP : protocols::denovo_design::components
SheetList : protocols::denovo_design::components
SheetOP : protocols::fldsgn::topology
SheetRemodelConstraintGeneratorCOP : protocols::fldsgn
SheetRemodelConstraintGeneratorOP : protocols::fldsgn
Sheets : protocols::fldsgn::topology
SheetSamplerCOP : protocols::loop_grower
SheetSamplerOP : protocols::loop_grower
SheetSetCOP : protocols::fldsgn::topology
SheetSetOP : protocols::fldsgn::topology
SheetTopologyFilterCOP : protocols::fldsgn::filters
SheetTopologyFilterOP : protocols::fldsgn::filters
SheetTranslateCOP : protocols::nonlocal
SheetTranslateOP : protocols::nonlocal
SHOBuriedUnsatisfiedPolarsCalculatorCOP : protocols::pose_metric_calculators
SHOBuriedUnsatisfiedPolarsCalculatorOP : protocols::pose_metric_calculators
ShortBackrubMoverCOP : protocols::simple_moves
ShortBackrubMoverOP : protocols::simple_moves
ShortestPathInFoldTreeAP : core::kinematics
ShortestPathInFoldTreeCOP : core::kinematics
ShortestPathInFoldTreeOP : core::kinematics
ShortLoopClosureCOP : protocols::loops::loop_closure::ccd
ShortLoopClosureOP : protocols::loops::loop_closure::ccd
ShortRangeTwoBodyEnergyCOP : core::scoring::methods
ShortRangeTwoBodyEnergyOP : core::scoring::methods
ShortSize : core
SICFastCOP : protocols::sic_dock
SICFastOP : protocols::sic_dock
SidechainContactDistCutoffCOP : protocols::frag_picker
SidechainContactDistCutoffOP : protocols::frag_picker
SideChainCopierCOP : protocols::stepwise::modeler::packer
SideChainCopierOP : protocols::stepwise::modeler::packer
SidechainMCMoverCOP : protocols::simple_moves::sidechain_moves
SidechainMCMoverOP : protocols::simple_moves::sidechain_moves
SidechainMinMoverCOP : protocols::docking
SidechainMinMoverOP : protocols::docking
SidechainMoverBaseCOP : protocols::simple_moves::sidechain_moves
SidechainMoverBaseOP : protocols::simple_moves::sidechain_moves
SidechainMoverCOP : protocols::simple_moves::sidechain_moves
SidechainMoverOP : protocols::simple_moves::sidechain_moves
SidechainNeighborCountMetricCOP : core::simple_metrics::per_residue_metrics
SidechainNeighborCountMetricOP : core::simple_metrics::per_residue_metrics
SidechainStateAssignmentCOP : core::pack::scmin
SidechainStateAssignmentOP : core::pack::scmin
SigmoidCOP : protocols::calc_taskop_filters
SigmoidFuncCOP : core::scoring::func
SigmoidFuncOP : core::scoring::func
SigmoidOP : protocols::calc_taskop_filters
SigmoidWeightedCenListRealOP : core::scoring
SigmoidWeightedCenListVectorOP : core::scoring
SilentFileDataOP : core::io::silent
SilentFileFullModelInputterCOP : protocols::jd3::full_model_inputters
SilentFileFullModelInputterOP : protocols::jd3::full_model_inputters
SilentFileJobInputterOP : protocols::jd2
SilentFileJobOutputterOP : protocols::jd2
SilentFileOptionsCOP : core::io::silent
SilentFileOptionsOP : core::io::silent
SilentFilePoseInputStreamOP : core::import_pose::pose_stream
SilentFilePoseInputterCOP : protocols::jd3::pose_inputters
SilentFilePoseInputterOP : protocols::jd3::pose_inputters
SilentFilePoseOutputSpecificationCOP : protocols::jd3::pose_outputters
SilentFilePoseOutputSpecificationOP : protocols::jd3::pose_outputters
SilentFilePoseOutputterCOP : protocols::jd3::pose_outputters
SilentFilePoseOutputterOP : protocols::jd3::pose_outputters
SilentObserverOP : protocols::viewer
SilentStructCOP : core::io::silent
SilentStructCreatorCOP : core::io::silent
SilentStructCreatorOP : core::io::silent
SilentStructFactoryOP : core::io::silent
SilentStructOP : core::io::silent
SilentStructOPs : core::io::silent
SilentStructStoreCOP : protocols::wum
SilentStructStoreOP : protocols::wum
SilentTrajectoryRecorderOP : protocols::canonical_sampling
SimAnnealerBaseOP : core::pack::annealer
SimPDBOP : protocols::cluster::calibur
SimpleCycpepPredictApplicationCOP : protocols::cyclic_peptide_predict
SimpleCycpepPredictApplicationCOPs : protocols::cyclic_peptide_predict
SimpleCycpepPredictApplicationOP : protocols::cyclic_peptide_predict
SimpleCycpepPredictApplicationOPs : protocols::cyclic_peptide_predict
SimpleDerivCheckResultCOP : core::optimization
SimpleDerivCheckResultOP : core::optimization
SimpleGlycosylateMoverCOP : protocols::carbohydrates
SimpleGlycosylateMoverOP : protocols::carbohydrates
SimpleHbondsToAtomFilterCOP : protocols::simple_filters
SimpleHbondsToAtomFilterOP : protocols::simple_filters
SimpleInteractionGraphCOP : core::pack::interaction_graph
SimpleInteractionGraphOP : core::pack::interaction_graph
SimpleMetricCOP : core::simple_metrics
SimpleMetricCreatorCOP : core::simple_metrics
SimpleMetricCreatorOP : core::simple_metrics
SimpleMetricDataAP : core::simple_metrics
SimpleMetricDataCAP : core::simple_metrics
SimpleMetricDataCOP : core::simple_metrics
SimpleMetricDataOP : core::simple_metrics
SimpleMetricFeaturesCOP : protocols::features
SimpleMetricFeaturesOP : protocols::features
SimpleMetricFilterCOP : protocols::simple_filters
SimpleMetricFilterOP : protocols::simple_filters
SimpleMetricOP : core::simple_metrics
SimpleMetricSelectorCOP : core::select::residue_selector
SimpleMetricSelectorOP : core::select::residue_selector
SimpleNodeManagerCOP : protocols::jd3::dag_node_managers
SimpleNodeManagerOP : protocols::jd3::dag_node_managers
SimplePoseSelectionCOP : protocols::stepwise::legacy::screener
SimplePoseSelectionOP : protocols::stepwise::legacy::screener
SimpleRMSD_ScreenerCOP : protocols::stepwise::legacy::screener
SimpleRMSD_ScreenerOP : protocols::stepwise::legacy::screener
SimpleSequenceDataOP : core::io::silent
SimpleThreadingMoverCOP : protocols::simple_moves
SimpleThreadingMoverOP : protocols::simple_moves
SimpleTreeBuilderCOP : protocols::nonlocal
SimpleTreeBuilderOP : protocols::nonlocal
Simulated4PDEERTraceCOP : core::scoring::epr_deer
Simulated4PDEERTraceFactoryCOP : core::scoring::epr_deer
Simulated4PDEERTraceFactoryOP : core::scoring::epr_deer
Simulated4PDEERTraceOP : core::scoring::epr_deer
SimulatedTemperingCOP : protocols::canonical_sampling
SimulatedTemperingOP : protocols::canonical_sampling , protocols::moves
SingleBasicRotamerLibraryCOP : core::pack::rotamers
SingleBasicRotamerLibraryCreatorCOP : core::pack::rotamers
SingleBasicRotamerLibraryCreatorOP : core::pack::rotamers
SingleBasicRotamerLibraryOP : core::pack::rotamers
SingleDownstreamResidueWriterCOP : protocols::match::output
SingleDownstreamResidueWriterOP : protocols::match::output
SingleFileBufferCOP : protocols::jd2
SingleFileBufferOP : protocols::jd2
SingleFragmentMoverCOP : protocols::nonlocal
SingleFragmentMoverOP : protocols::nonlocal
SingleGridCOP : protocols::qsar::scoring_grid
SingleGridOP : protocols::qsar::scoring_grid
SingleJobOutputPair : protocols::jd3
SingleLigandRotamerLibraryAP : core::pack::rotamers
SingleLigandRotamerLibraryCAP : core::pack::rotamers
SingleLigandRotamerLibraryCOP : core::pack::rotamers
SingleLigandRotamerLibraryCreatorCOP : core::pack::rotamers
SingleLigandRotamerLibraryCreatorOP : core::pack::rotamers
SingleLigandRotamerLibraryOP : core::pack::rotamers
SingleLoopMoverCOP : protocols::loops::loop_mover
SingleLoopMoverOP : protocols::loops::loop_mover
SingleMotifCOP : protocols::motifs
SingleMotifCOPs : protocols::motifs
SingleMotifOP : protocols::motifs
SingleMotifOPs : protocols::motifs
SingleNCAARotamerLibraryCreatorCOP : core::pack::rotamers
SingleNCAARotamerLibraryCreatorOP : core::pack::rotamers
SingleResidueCenrotLibraryAP : core::pack::dunbrack::cenrot
SingleResidueCenrotLibraryCAP : core::pack::dunbrack::cenrot
SingleResidueCenrotLibraryCOP : core::pack::dunbrack::cenrot
SingleResidueCenrotLibraryCreatorCOP : core::pack::dunbrack::cenrot
SingleResidueCenrotLibraryCreatorOP : core::pack::dunbrack::cenrot
SingleResidueCenrotLibraryOP : core::pack::dunbrack::cenrot
SingleResidueDunbrackLibraryAP : core::pack::dunbrack
SingleResidueDunbrackLibraryCAP : core::pack::dunbrack
SingleResidueDunbrackLibraryCOP : core::pack::dunbrack
SingleResidueDunbrackLibraryCreatorCOP : core::pack::dunbrack
SingleResidueDunbrackLibraryCreatorOP : core::pack::dunbrack
SingleResidueDunbrackLibraryOP : core::pack::dunbrack
SingleResidueFragDataCOP : core::fragment
SingleResidueFragDataOP : core::fragment
SingleResidueInvrotTargetCOP : protocols::toolbox::match_enzdes_util
SingleResidueInvrotTargetOP : protocols::toolbox::match_enzdes_util
SingleResidueRotamerLibraryAP : core::pack::rotamers
SingleResidueRotamerLibraryCAP : core::pack::rotamers
SingleResidueRotamerLibraryCOP : core::pack::rotamers
SingleResidueRotamerLibraryCreatorCOP : core::pack::rotamers
SingleResidueRotamerLibraryCreatorOP : core::pack::rotamers
SingleResidueRotamerLibraryOP : core::pack::rotamers
SingleResidueTorsionFragmentLibraryOP : protocols::frags
SingleStateCOP : protocols::multistate_design
SingleStateCOPs : protocols::multistate_design
SingleStateFitnessFunctionCOP : protocols::multistate_design
SingleStateFitnessFunctionOP : protocols::multistate_design
SingleStateOP : protocols::multistate_design
SingleStateOPs : protocols::multistate_design
SingleStructureDataCOP : protocols::optimize_weights
SingleStructureDataOP : protocols::optimize_weights
SingleStructureDataOPs : protocols::optimize_weights
SiteConstraintCOP : core::scoring::constraints
SiteConstraintOP : core::scoring::constraints
SiteConstraintResiduesCOP : core::scoring::constraints
SiteConstraintResiduesOP : core::scoring::constraints
SixDTransRotPotentialCOP : core::scoring::loop_graph::evaluator
SixDTransRotPotentialEvaluatorCOP : core::scoring::loop_graph::evaluator
SixDTransRotPotentialEvaluatorOP : core::scoring::loop_graph::evaluator
SixDTransRotPotentialOP : core::scoring::loop_graph::evaluator
Size : core , protocols::fldsgn::potentials::sspot , protocols::flxbb
Size3 : protocols::match
Size4 : core::pack::dunbrack , protocols::match
Size5 : core::pack::dunbrack
SizeCR : core::pose::motif
SizeDIET : protocols::jd3::standard
SizeInSegmentsRequirementCOP : protocols::sewing::requirements
SizeInSegmentsRequirementCreatorCOP : protocols::sewing::requirements
SizeInSegmentsRequirementCreatorOP : protocols::sewing::requirements
SizeInSegmentsRequirementOP : protocols::sewing::requirements
SizeList : protocols::abinitio , protocols::noesy_assign
SizePair : protocols::denovo_design
Sizes : core::scoring::motif , protocols::frags , protocols::kinmatch , protocols::sic_dock::scores , protocols::sic_dock
SizeValuedParameterAP : core::conformation::parametric
SizeValuedParameterCAP : core::conformation::parametric
SizeValuedParameterCAPs : core::conformation::parametric
SizeValuedParameterCOP : core::conformation::parametric
SizeValuedParameterCOPs : core::conformation::parametric
SizeValuedParameterOP : core::conformation::parametric
SizeValuedParameterOPs : core::conformation::parametric
SizeVectorValuedParameterAP : core::conformation::parametric
SizeVectorValuedParameterCAP : core::conformation::parametric
SizeVectorValuedParameterCAPs : core::conformation::parametric
SizeVectorValuedParameterCOP : core::conformation::parametric
SizeVectorValuedParameterCOPs : core::conformation::parametric
SizeVectorValuedParameterOP : core::conformation::parametric
SizeVectorValuedParameterOPs : core::conformation::parametric
SliceIter : core::scoring::packstat
SliceResidueSelectorCOP : core::select::residue_selector
SliceResidueSelectorOP : core::select::residue_selector
Slices : core::scoring::packstat
SliceToMiniProteinMoverCOP : protocols::pose_creation
SliceToMiniProteinMoverOP : protocols::pose_creation
SlideIntoContactCOP : protocols::docking
SlideIntoContactOP : protocols::docking
SlidingWindowLoopClosureCOP : protocols::loops::loop_closure::ccd
SlidingWindowLoopClosureOP : protocols::loops::loop_closure::ccd
SmallBBSamplerCOP : protocols::simple_moves::bb_sampler
SmallBBSamplerOP : protocols::simple_moves::bb_sampler
SmallFragWeightAP : protocols::topology_broker::weights
SmallFragWeightCAP : protocols::topology_broker::weights
SmallFragWeightCOP : protocols::topology_broker::weights
SmallFragWeightOP : protocols::topology_broker::weights
SmallMinCCDTrialCOP : protocols::loops::loop_mover::refine
SmallMinCCDTrialOP : protocols::loops::loop_mover::refine
SmallMoveKinematicPerturberCOP : protocols::loops::loop_closure::kinematic_closure
SmallMoveKinematicPerturberOP : protocols::loops::loop_closure::kinematic_closure
SmallMoverCOP : protocols::simple_moves
SmallMoverOP : protocols::simple_moves
SmartAssemblyCOP : protocols::sewing::data_storage
SmartAssemblyOP : protocols::sewing::data_storage
SmartFixbbSimAnnealerOP : core::pack::annealer
SmartSegmentCOP : protocols::sewing::data_storage
SmartSegmentOP : protocols::sewing::data_storage
SmartSewingResidueCOP : protocols::sewing::data_storage
SmartSewingResidueOP : protocols::sewing::data_storage
SmoothEnvPairPotentialCOP : core::scoring
SmoothEnvPairPotentialOP : core::scoring
SmoothFragmentMoverCOP : protocols::simple_moves
SmoothFragmentMoverOP : protocols::simple_moves
SmoothFragWeightAP : protocols::topology_broker::weights
SmoothFragWeightCAP : protocols::topology_broker::weights
SmoothFragWeightCOP : protocols::topology_broker::weights
SmoothFragWeightOP : protocols::topology_broker::weights
SmoothStepFuncCOP : core::scoring::func
SmoothStepFuncOP : core::scoring::func
SmoothSymmetricFragmentMoverCOP : protocols::simple_moves
SmoothSymmetricFragmentMoverOP : protocols::simple_moves
SnugDockCOP : protocols::antibody::snugdock
SnugDockOP : protocols::antibody::snugdock
SnugDockProtocolCOP : protocols::antibody::snugdock
SnugDockProtocolOP : protocols::antibody::snugdock
SoedingFuncOP : core::scoring::func
SOGFunc_ImplOP : core::scoring::func
SOGFuncOP : core::scoring::func
SolutionList : protocols::kinematic_closure
SolutionPickerCOP : protocols::kinematic_closure::solution_pickers
SolutionPickerOP : protocols::kinematic_closure::solution_pickers
SolvationGridCOP : protocols::qsar::scoring_grid
SolvationGridOP : protocols::qsar::scoring_grid
SourcePositionsOP : protocols::rna::denovo::coarse
SpanCOP : core::conformation::membrane
SpanningTopologyCOP : core::conformation::membrane
SpanningTopologyOP : core::conformation::membrane
SpanOP : core::conformation::membrane
SPAtomCIter : core::scoring::packstat
SPAtomIter : core::scoring::packstat
SPAtoms : core::scoring::packstat
SpecialRotamerEnergyOP : protocols::scoring::methods
SpecialRotamerRSOCOP : protocols::toolbox::rotamer_set_operations
SpecialRotamerRSOOP : protocols::toolbox::rotamer_set_operations
SpecialSegmentsObserverCOP : core::pose::datacache
SpecialSegmentsObserverOP : core::pose::datacache
SpecificResiduesNearInterfaceFilterCOP : protocols::protein_interface_design::filters
SpecificResiduesNearInterfaceFilterOP : protocols::protein_interface_design::filters
SphereCIter : core::scoring::packstat
SphereIter : core::scoring::packstat
Spheres : core::scoring::packstat
SpinAroundPartnerMoverCOP : protocols::membrane
SpinAroundPartnerMoverOP : protocols::membrane
SpinlabelDatabaseEntryCOP : core::io::nmr
SpinlabelDatabaseEntryOP : core::io::nmr
SpinlabelDatabaseHandlerCOP : core::io::nmr
SpinlabelDatabaseHandlerOP : core::io::nmr
SpliceCOP : protocols::splice
SpliceInAntibodyCOP : protocols::splice
SpliceInAntibodyOP : protocols::splice
SpliceInCOP : protocols::splice
SpliceInOP : protocols::splice
SpliceInTailCOP : protocols::splice
SpliceInTailOP : protocols::splice
SpliceManagerCOP : protocols::splice
SpliceManagerOP : protocols::splice
SpliceOP : protocols::splice
SpliceOutAntibodyCOP : protocols::splice
SpliceOutAntibodyOP : protocols::splice
SpliceOutCOP : protocols::splice
SpliceOutOP : protocols::splice
SpliceOutTailCOP : protocols::splice
SpliceOutTailOP : protocols::splice
SpliceSegmentCOP : protocols::splice
SpliceSegmentOP : protocols::splice
SplineFuncCOP : core::scoring::func
SplineFuncOP : core::scoring::func
SplitAndMixPoseMoverCOP : protocols::fold_from_loops::movers
SplitAndMixPoseMoverOP : protocols::fold_from_loops::movers
SplitLine : core::scoring::epr_deer
SplitLineMap : core::scoring::epr_deer
SplitLines : core::scoring::epr_deer
SplitUnfoldedTwoBodyEnergyOP : core::energy_methods
SplitUnfoldedTwoBodyPotentialOP : core::scoring
SquarePlanarMetal_HelperCOP : protocols::cyclic_peptide::crosslinker
SquarePlanarMetal_HelperOP : protocols::cyclic_peptide::crosslinker
SquarePyramidalMetal_HelperCOP : protocols::cyclic_peptide::crosslinker
SquarePyramidalMetal_HelperOP : protocols::cyclic_peptide::crosslinker
SquareWell2FuncCOP : core::scoring::func
SquareWell2FuncOP : core::scoring::func
SquareWellFuncCOP : core::scoring::func
SquareWellFuncOP : core::scoring::func
SS_BaseCOP : protocols::fldsgn::topology
SS_BaseOP : protocols::fldsgn::topology
SS_Info2_COP : protocols::fldsgn::topology
SS_Info2_OP : protocols::fldsgn::topology
SS_InfoCOP : core::scoring
SS_InfoOP : core::scoring
SS_Killhairpins_InfoCOP : core::scoring
SS_Killhairpins_InfoOP : core::scoring
SS_predictorAP : protocols::ss_prediction
SS_predictorCAP : protocols::ss_prediction
SS_predictorCOP : protocols::ss_prediction
SS_predictorOP : protocols::ss_prediction
SSElementBisectddGFilterCOP : protocols::simple_ddg
SSElementBisectddGFilterOP : protocols::simple_ddg
SSElementLengthFilterCOP : protocols::simple_filters
SSElementLengthFilterOP : protocols::simple_filters
SSElementMotifContactFilterCOP : protocols::simple_filters
SSElementMotifContactFilterOP : protocols::simple_filters
SSElementSelectorCOP : core::select::residue_selector
SSElementSelectorOP : core::select::residue_selector
SSFeatureCOP : protocols::comparative_modeling::features
SSFeatureOP : protocols::comparative_modeling::features
SSize : core
SSManagerCOP : core::sequence
SSManagerOP : core::sequence
SSMotifFinderCOP : protocols::simple_filters
SSMotifFinderOP : protocols::simple_filters
SSPairPotentialOP : protocols::fldsgn::potentials::sspot
SSPredictionFilterCOP : protocols::denovo_design::filters
SSPredictionFilterOP : protocols::denovo_design::filters
SSShapeComplementarityFilterAP : protocols::denovo_design::filters
SSShapeComplementarityFilterCAP : protocols::denovo_design::filters
SSShapeComplementarityFilterCOP : protocols::denovo_design::filters
SSShapeComplementarityFilterOP : protocols::denovo_design::filters
StageIDs : protocols::abinitio::abscript
StagePreparerCOP : protocols::abinitio::abscript
StagePreparerOP : protocols::abinitio::abscript
StandardInnerLarvalJobCOP : protocols::jd3::standard
StandardInnerLarvalJobOP : protocols::jd3::standard
StandardInnerLarvalJobs : protocols::jd3::standard
StandardJobQueenCOP : protocols::jd3::standard
StandardJobQueenOP : protocols::jd3::standard
StandardNPDHBondInteractionGraph : core::pack::interaction_graph
StandardNPDHBondInteractionGraphOP : core::pack::interaction_graph
StandardPairingLibraryCOP : protocols::jumping
StandardPairingLibraryOP : protocols::jumping
StandardPivotsCOP : protocols::kinematic_closure::pivot_pickers
StandardPivotsOP : protocols::kinematic_closure::pivot_pickers
StandardPoseJobSummaryCOP : protocols::jd3::job_summaries
StandardPoseJobSummaryOP : protocols::jd3::job_summaries
StandardResultOutputterCOP : protocols::jd3::output
StandardResultOutputterOP : protocols::jd3::output
StarAbinitioCOP : protocols::star
StarAbinitioOP : protocols::star
StartFromOP : protocols::ligand_docking
StartingNodeMotifScorerCOP : protocols::sewing::scoring
StartingNodeMotifScorerCreatorCOP : protocols::sewing::scoring
StartingNodeMotifScorerCreatorOP : protocols::sewing::scoring
StartingNodeMotifScorerOP : protocols::sewing::scoring
StarTreeBuilderCOP : protocols::nonlocal
StarTreeBuilderOP : protocols::nonlocal
StartStructClaimerAP : protocols::topology_broker
StartStructClaimerCAP : protocols::topology_broker
StartStructClaimerCOP : protocols::topology_broker
StartStructClaimerOP : protocols::topology_broker
StateAccumulatingMatchFilterCOP : protocols::match::output
StateAccumulatingMatchFilterOP : protocols::match::output
StatEntries : protocols::abinitio
StatEntryList : protocols::abinitio
StealLigandMoverCOP : protocols::comparative_modeling
StealLigandMoverOP : protocols::comparative_modeling
StealSideChainsMoverCOP : protocols::comparative_modeling
StealSideChainsMoverOP : protocols::comparative_modeling
StemFinderCOP : protocols::simple_filters
StemFinderOP : protocols::simple_filters
StepWiseBasicModelerOptionsCOP : protocols::stepwise::modeler::options
StepWiseBasicModelerOptionsOP : protocols::stepwise::modeler::options
StepWiseBasicOptionsCOP : protocols::stepwise::options
StepWiseBasicOptionsOP : protocols::stepwise::options
StepWiseBasicWorkingParametersCOP : protocols::stepwise::modeler::working_parameters
StepWiseBasicWorkingParametersOP : protocols::stepwise::modeler::working_parameters
StepWiseClustererCOP : protocols::stepwise::modeler::align
StepWiseClustererOP : protocols::stepwise::modeler::align
StepWiseConnectionSamplerCOP : protocols::stepwise::modeler
StepWiseConnectionSamplerOP : protocols::stepwise::modeler
StepWiseLegacyClustererCOP : protocols::stepwise::modeler::align
StepWiseLegacyClustererOP : protocols::stepwise::modeler::align
StepWiseLegacyClustererSilentBasedCOP : protocols::stepwise::modeler::align
StepWiseLegacyClustererSilentBasedOP : protocols::stepwise::modeler::align
StepWiseMasterMoverCOP : protocols::stepwise::monte_carlo::mover
StepWiseMasterMoverOP : protocols::stepwise::monte_carlo::mover
StepWiseMasterPackerCOP : protocols::stepwise::modeler::packer
StepWiseMasterPackerOP : protocols::stepwise::modeler::packer
StepWiseMinimizerCOP : protocols::stepwise::modeler
StepWiseMinimizerOP : protocols::stepwise::modeler
StepWiseModelerCOP : protocols::stepwise::modeler
StepWiseModelerOP : protocols::stepwise::modeler
StepWiseModelerOptionsCOP : protocols::stepwise::modeler::options
StepWiseModelerOptionsOP : protocols::stepwise::modeler::options
StepWiseMonteCarloCOP : protocols::stepwise::monte_carlo
StepWiseMonteCarloOP : protocols::stepwise::monte_carlo
StepWiseMonteCarloOptionsCOP : protocols::stepwise::monte_carlo::options
StepWiseMonteCarloOptionsOP : protocols::stepwise::monte_carlo::options
StepWiseMoveCOP : protocols::stepwise::monte_carlo::mover
StepWiseMoveOP : protocols::stepwise::monte_carlo::mover
StepWiseMoveSelectorCOP : protocols::stepwise::monte_carlo::mover
StepWiseMoveSelectorOP : protocols::stepwise::monte_carlo::mover
StepWiseMoveSelectorOptionsCOP : protocols::stepwise::monte_carlo::mover::options
StepWiseMoveSelectorOptionsOP : protocols::stepwise::monte_carlo::mover::options
StepWisePackerCOP : protocols::stepwise::modeler::packer
StepWisePackerOP : protocols::stepwise::modeler::packer
StepWisePoseAlignerCOP : protocols::stepwise::modeler::align
StepWisePoseAlignerOP : protocols::stepwise::modeler::align
StepWiseProteinCCD_CloserCOP : protocols::stepwise::modeler::protein::loop_close
StepWiseProteinCCD_CloserOP : protocols::stepwise::modeler::protein::loop_close
StepWiseProteinCCD_MultiPoseCloserCOP : protocols::stepwise::modeler::protein::loop_close
StepWiseProteinCCD_MultiPoseCloserOP : protocols::stepwise::modeler::protein::loop_close
StepWiseProteinMinimizerCOP : protocols::stepwise::legacy::modeler::protein
StepWiseProteinMinimizerOP : protocols::stepwise::legacy::modeler::protein
StepWiseProteinModelerOptionsCOP : protocols::stepwise::modeler::options
StepWiseProteinModelerOptionsOP : protocols::stepwise::modeler::options
StepWiseProteinPoseSetupCOP : protocols::stepwise::legacy::modeler::protein
StepWiseProteinPoseSetupOP : protocols::stepwise::legacy::modeler::protein
StepWiseResiduePairScreenerCOP : protocols::stepwise::screener
StepWiseResiduePairScreenerOP : protocols::stepwise::screener
StepWiseRNA_CombineLongLoopFiltererOP : protocols::stepwise::modeler::rna
StepWiseRNA_CombineLongLoopFiltererpCOP : protocols::stepwise::modeler::rna
StepWiseRNA_MinimizerCOP : protocols::stepwise::legacy::modeler::rna
StepWiseRNA_MinimizerOP : protocols::stepwise::legacy::modeler::rna
StepWiseRNA_ModelerOptionsCOP : protocols::stepwise::modeler::options
StepWiseRNA_ModelerOptionsOP : protocols::stepwise::modeler::options
StepWiseRNA_PoseSelectionCOP : protocols::stepwise::legacy::modeler::rna
StepWiseRNA_PoseSelectionOP : protocols::stepwise::legacy::modeler::rna
StepWiseRNA_PoseSetupCOP : protocols::stepwise::legacy::modeler::rna
StepWiseRNA_PoseSetupOP : protocols::stepwise::legacy::modeler::rna
StepWiseSampleAndScreenCOP : protocols::stepwise
StepWiseSampleAndScreenOP : protocols::stepwise
StepWiseSamplerCombOP : protocols::stepwise::sampler
StepWiseSamplerCOP : protocols::stepwise::sampler
StepWiseSamplerOneDOFOP : protocols::stepwise::sampler
StepWiseSamplerOneTorsionOP : protocols::stepwise::sampler
StepWiseSamplerOneValueCombOP : protocols::stepwise::sampler
StepWiseSamplerOneValueOP : protocols::stepwise::sampler
StepWiseSamplerOP : protocols::stepwise::sampler
StepWiseSamplerRingConformerOP : protocols::stepwise::sampler
StepWiseSamplerSizedAnyOP : protocols::stepwise::sampler
StepWiseSamplerSizedCombOP : protocols::stepwise::sampler
StepWiseSamplerSizedOP : protocols::stepwise::sampler
StepWiseScreenerCOP : protocols::stepwise::screener
StepWiseScreenerOP : protocols::stepwise::screener
StepWiseWorkingParametersCOP : protocols::stepwise::modeler::working_parameters
StepWiseWorkingParametersOP : protocols::stepwise::modeler::working_parameters
STMStoredTaskCOP : protocols::task_operations
STMStoredTaskOP : protocols::task_operations
StochasticFilterCOP : protocols::filters
StochasticFilterOP : protocols::filters
StoreCombinedStoredTasksMoverCOP : protocols::task_operations
StoreCombinedStoredTasksMoverOP : protocols::task_operations
StoreCompoundTaskMoverCOP : protocols::task_operations
StoreCompoundTaskMoverOP : protocols::task_operations
StoredResidueSubsetSelectorCOP : protocols::residue_selectors
StoredResidueSubsetSelectorOP : protocols::residue_selectors
StoredRotamerLibrarySpecificationCOP : core::chemical::rotamers
StoredRotamerLibrarySpecificationOP : core::chemical::rotamers
StorePoseSnapshotCOP : protocols::simple_moves
StorePoseSnapshotOP : protocols::simple_moves
StoreResidueSubsetMoverCOP : protocols::residue_selectors
StoreResidueSubsetMoverOP : protocols::residue_selectors
StoreTaskMoverCOP : protocols::task_operations
StoreTaskMoverOP : protocols::task_operations
StrandArchitectCOP : protocols::denovo_design::architects
StrandArchitectOP : protocols::denovo_design::architects
StrandBulges : protocols::denovo_design::architects
StrandBundleFeaturesCOP : protocols::features::strand_assembly
StrandBundleFeaturesOP : protocols::features::strand_assembly
StrandCOP : protocols::fldsgn::topology
StrandCurvatureByLevelsCOP : protocols::fldsgn::filters
StrandCurvatureByLevelsOP : protocols::fldsgn::filters
StrandExtended : protocols::denovo_design::architects
StrandExtensions : protocols::denovo_design::architects
StrandHelixGeometryFilterCOP : protocols::fldsgn::filters
StrandHelixGeometryFilterOP : protocols::fldsgn::filters
StrandNameToNumberMap : protocols::denovo_design
StrandOP : protocols::fldsgn::topology
StrandOrientations : protocols::denovo_design::components
StrandPairingCOP : core::scoring::dssp , protocols::denovo_design::components , protocols::fldsgn::topology
StrandPairingCOPs : protocols::denovo_design::components , protocols::fldsgn::topology
StrandPairingOP : core::scoring::dssp , protocols::denovo_design::components , protocols::fldsgn::topology
StrandPairingOPs : protocols::denovo_design::components
StrandPairings : protocols::fldsgn::topology
StrandPairingSetCOP : core::scoring::dssp , protocols::fldsgn::topology
StrandPairingSetOP : core::scoring::dssp , protocols::fldsgn::topology
Strands : protocols::fldsgn::topology
string : core::import_pose::pose_stream
String : core::import_pose , core::io::mmcif , core::io::pdb , core::io , protocols::flxbb
StringFilter_pair : protocols::filters
StringList : protocols::sparta
StringMap : protocols::denovo_design::components
StringMetricCOP : core::simple_metrics
StringMetricCreatorCOP : core::simple_metrics
StringMetricCreatorOP : core::simple_metrics
StringMetricOP : core::simple_metrics
Strings : protocols::dna , protocols::optimize_weights
StringUP : protocols::network
StringVDMapping : core::chemical
StringVec : protocols::cluster::calibur
StringVecOP : protocols::cluster::calibur
StrStrMap : core::chemical::sdf
StructFileReaderOptionsCOP : core::io
StructFileReaderOptionsOP : core::io
StructFileRepCOP : core::io
StructFileRepOP : core::io
StructFileRepOptionsCOP : core::io
StructFileRepOptionsOP : core::io
StructFragmentMoverCOP : protocols::struct_fragment
StructFragmentMoverOP : protocols::struct_fragment
StructPerturberCMCOP : protocols::abinitio::abscript
StructPerturberCMOP : protocols::abinitio::abscript
StructProfileMoverCOP : protocols::simple_moves
StructProfileMoverOP : protocols::simple_moves
StructuralSimilarityEvaluatorCOP : protocols::simple_filters
StructuralSimilarityEvaluatorOP : protocols::simple_filters
Structure_Map : core::io::silent
StructureArchitectCOP : protocols::denovo_design::architects
StructureArchitectOP : protocols::denovo_design::architects
StructureDataAP : protocols::denovo_design::components
StructureDatabaseCOP : protocols::indexed_structure_store::search
StructureDatabaseOP : protocols::indexed_structure_store::search
StructureDataCAP : protocols::denovo_design::components
StructureDataCOP : protocols::denovo_design::components
StructureDataCOPs : protocols::denovo_design::components
StructureDataFactoryCOP : protocols::denovo_design::components
StructureDataFactoryOP : protocols::denovo_design::components
StructureDataObserverAP : protocols::denovo_design::components
StructureDataObserverCAP : protocols::denovo_design::components
StructureDataObserverCOP : protocols::denovo_design::components
StructureDataObserverOP : protocols::denovo_design::components
StructureDataOP : protocols::denovo_design::components
StructureDataOPs : protocols::denovo_design::components
StructureDataPerturberCOP : protocols::denovo_design::components
StructureDataPerturberCOPs : protocols::denovo_design::components
StructureDataPerturberOP : protocols::denovo_design::components
StructureDataPerturberOPs : protocols::denovo_design::components
StructureDataPerturbers : protocols::denovo_design::components
StructureFeaturesCOP : protocols::features
StructureFeaturesOP : protocols::features
StructureID : protocols::features
StructureMap : core::io::raw_data
StructureRestrictorCOP : protocols::moves
StructureRestrictorOP : protocols::moves
StructureScoresFeaturesCOP : protocols::features
StructureScoresFeaturesOP : protocols::features
StructureSlices : protocols::denovo_design::components
StructureStoreAP : protocols::indexed_structure_store
StructureStoreCOP : protocols::indexed_structure_store
StructureStoreOP : protocols::indexed_structure_store
StructureStoreProviderCOP : protocols::indexed_structure_store
StructureStoreProviderOP : protocols::indexed_structure_store
StruOP : protocols::cluster::calibur
StubApplierCOP : protocols::stepwise::screener
StubApplierOP : protocols::stepwise::screener
StubDistanceScreenerCOP : protocols::stepwise::screener
StubDistanceScreenerOP : protocols::stepwise::screener
StubScoreFilterCOP : protocols::protein_interface_design::filters
StubScoreFilterOP : protocols::protein_interface_design::filters
StubScoreLoopsFilterCOP : protocols::protein_interface_design::filters
StubScoreLoopsFilterOP : protocols::protein_interface_design::filters
SubMotifInfoCOP : core::pose::full_model_info
SubMotifInfoOP : core::pose::full_model_info
SubMotifLibraryCOP : protocols::stepwise::monte_carlo::submotif
SubMotifLibraryOP : protocols::stepwise::monte_carlo::submotif
SubMotifSequenceSet : protocols::stepwise::monte_carlo::submotif
SubroutineMoverCOP : protocols::protein_interface_design::movers
SubroutineMoverOP : protocols::protein_interface_design::movers
SubsetPartnerMotifScorerCOP : protocols::sewing::scoring
SubsetPartnerMotifScorerCreatorCOP : protocols::sewing::scoring
SubsetPartnerMotifScorerCreatorOP : protocols::sewing::scoring
SubsetPartnerMotifScorerOP : protocols::sewing::scoring
SugarBackboneEnergyCOP : core::energy_methods
SugarBackboneEnergyOP : core::energy_methods
SugarBBSamplerCOP : protocols::simple_moves::bb_sampler
SugarBBSamplerOP : protocols::simple_moves::bb_sampler
SugarInstantiateMoverCOP : protocols::stepwise::modeler::rna::sugar
SugarInstantiateMoverOP : protocols::stepwise::modeler::rna::sugar
SugarInstantiatorCOP : protocols::stepwise::screener
SugarInstantiatorOP : protocols::stepwise::screener
SugarModelingCOP : protocols::stepwise::modeler::rna::sugar
SugarModelingOP : protocols::stepwise::modeler::rna::sugar
SugarModificationsNomenclatureTable : core::chemical::carbohydrates
SugarVirtualizeMoverCOP : protocols::stepwise::modeler::rna::sugar
SugarVirtualizeMoverOP : protocols::stepwise::modeler::rna::sugar
sum_water_weights_iterator : core::energy_methods
SumFuncOP : core::scoring::func
SuperimposeMoverCOP : protocols::simple_moves
SuperimposeMoverOP : protocols::simple_moves
SurfaceDockingProtocolOP : protocols::surface_docking
SurfaceEnergiesCOP : core::scoring::solid_surface
SurfaceEnergiesOP : core::scoring::solid_surface
SurfaceOrientMoverOP : protocols::surface_docking
SurfaceParametersCOP : protocols::surface_docking
SurfaceParametersOP : protocols::surface_docking
SurfaceVectorLoaderCOP : protocols::surface_docking
SurfaceVectorLoaderOP : protocols::surface_docking
SurrogateVariableExpressionCOP : protocols::pack_daemon
SurrogateVariableExpressionOP : protocols::pack_daemon
SWAlignerCOP : core::sequence
SWAlignerOP : core::sequence
SwitchChainOrderMoverCOP : protocols::simple_moves
SwitchChainOrderMoverOP : protocols::simple_moves
SwitchMoverCOP : protocols::moves
SwitchMoverOP : protocols::moves
SwitchResidueTypeSetMoverCOP : protocols::simple_moves
SwitchResidueTypeSetMoverOP : protocols::simple_moves
SymAtomTreeMinimizerCOP : core::optimization::symmetry
SymAtomTreeMinimizerOP : core::optimization::symmetry
SymDockingHiResCOP : protocols::symmetric_docking
SymDockingHiResOP : protocols::symmetric_docking
SymDockingInitialPerturbationCOP : protocols::symmetry
SymDockingInitialPerturbationOP : protocols::symmetry
SymDockingLowResCOP : protocols::symmetric_docking
SymDockingLowResOP : protocols::symmetric_docking
SymDockProtocolCOP : protocols::symmetric_docking
SymDockProtocolOP : protocols::symmetric_docking
SymDofCOP : core::conformation::symmetry
SymDofMoverCOP : protocols::matdes
SymDofMoverOP : protocols::matdes
SymDofOP : core::conformation::symmetry
SymEnergyCutRotamerTrialsMoverCOP : protocols::minimization_packing::symmetry
SymEnergyCutRotamerTrialsMoverOP : protocols::minimization_packing::symmetry
SymFoldandDockMoveRbJumpMoverCOP : protocols::symmetric_docking
SymFoldandDockMoveRbJumpMoverOP : protocols::symmetric_docking
SymFoldandDockRbTrialMoverCOP : protocols::simple_moves::symmetry , protocols::symmetric_docking
SymFoldandDockRbTrialMoverOP : protocols::simple_moves::symmetry , protocols::symmetric_docking
SymFoldandDockSlideTrialMoverCOP : protocols::symmetric_docking
SymFoldandDockSlideTrialMoverOP : protocols::symmetric_docking
SymInterfaceSidechainMinMoverCOP : protocols::symmetric_docking
SymInterfaceSidechainMinMoverOP : protocols::symmetric_docking
SymmDataCOP : core::conformation::symmetry
SymmDataLoaderCOP : core::conformation::symmetry
SymmDataLoaderOP : core::conformation::symmetry
SymmDataOP : core::conformation::symmetry
SymmDataOptionsCOP : core::conformation::symmetry
SymmDataOptionsOP : core::conformation::symmetry
SymmetricAddMembraneMoverCOP : protocols::membrane::symmetry
SymmetricAddMembraneMoverOP : protocols::membrane::symmetry
SymmetricalResidueSelectorCOP : core::select::residue_selector
SymmetricalResidueSelectorOP : core::select::residue_selector
SymmetricConformation : core::pack
SymmetricConformationCOP : core::conformation::symmetry
SymmetricConformationOP : core::conformation::symmetry
SymmetricCycpepAlignCOP : protocols::cyclic_peptide
SymmetricCycpepAlignOP : protocols::cyclic_peptide
SymmetricEnergiesCOP : core::scoring::symmetry
SymmetricEnergiesOP : core::scoring::symmetry
SymmetricFragmentMoverCOP : protocols::simple_moves
SymmetricFragmentMoverOP : protocols::simple_moves
SymmetricRMSMoverCOP : protocols::symmetry
SymmetricRMSMoverOP : protocols::symmetry
SymmetricRotamerSet_COP : core::pack::rotamer_set::symmetry
SymmetricRotamerSet_OP : core::pack::rotamer_set::symmetry
SymmetricRotamerSetsCOP : core::pack::rotamer_set::symmetry
SymmetricRotamerSetsOP : core::pack::rotamer_set::symmetry
SymmetricScoreFunctionCOP : core::scoring::symmetry
SymmetricScoreFunctionOP : core::scoring::symmetry
SymmetryClaimAP : protocols::topology_broker::claims
SymmetryClaimCAP : protocols::topology_broker::claims
SymmetryClaimCOP : protocols::topology_broker::claims
SymmetryClaimerAP : protocols::topology_broker
SymmetryClaimerCAP : protocols::topology_broker
SymmetryClaimerCOP : protocols::topology_broker
SymmetryClaimerOP : protocols::topology_broker
SymmetryClaimOP : protocols::topology_broker::claims
SymmetryClaims : protocols::topology_broker::claims
SymmetryInfo : core::pack
SymmetryInfoCOP : core::conformation::symmetry
SymmetryInfoOP : core::conformation::symmetry
SymmetrySliderCOP : protocols::symmetry
SymmetrySliderOP : protocols::symmetry
SymmetryTransformCOP : core::conformation::symmetry
SymmetryTransformOP : core::conformation::symmetry
SymMinimizerMapCOP : core::optimization::symmetry
SymMinimizerMapOP : core::optimization::symmetry
SymMinMoverCOP : protocols::minimization_packing::symmetry
SymMinMoverOP : protocols::minimization_packing::symmetry
SymmLinearMemoryInteractionGraphCOP : core::pack::interaction_graph
SymmLinearMemoryInteractionGraphOP : core::pack::interaction_graph
SymmMinimalistInteractionGraphCOP : core::pack::interaction_graph
SymmMinimalistInteractionGraphOP : core::pack::interaction_graph
SymmOnTheFlyInteractionGraphCOP : core::pack::interaction_graph
SymmOnTheFlyInteractionGraphOP : core::pack::interaction_graph
SymPackRotamersMoverCOP : protocols::minimization_packing::symmetry
SymPackRotamersMoverOP : protocols::minimization_packing::symmetry
SymRestrictTaskForDockingOP : protocols::symmetric_docking
SymRotamerTrialsMoverCOP : protocols::minimization_packing::symmetry
SymRotamerTrialsMoverOP : protocols::minimization_packing::symmetry
SymShakeStructureMoverCOP : protocols::symmetry
SymShakeStructureMoverOP : protocols::symmetry
SymSidechainMinMoverCOP : protocols::symmetric_docking
SymSidechainMinMoverOP : protocols::symmetric_docking
SymSlideInfoCOP : core::conformation::symmetry
SymSlideInfoOP : core::conformation::symmetry
SymUnsatHbondFilterCOP : protocols::matdes
SymUnsatHbondFilterOP : protocols::matdes