basic::options::OptionKeys::symmetry Namespace Reference

Variables
BooleanOptionKey const	symmetry
StringOptionKey const	symmetry_definition
RealOptionKey const	reweight_symm_interactions
BooleanOptionKey const	initialize_rigid_body_dofs
BooleanOptionKey const	detect_bonds
RealVectorOptionKey const	perturb_rigid_body_dofs
BooleanOptionKey const	symmetric_rmsd

Variable Documentation

detect_bonds

BooleanOptionKey const basic::options::OptionKeys::symmetry::detect_bonds

extern

Referenced by hbs_creator::apply().

initialize_rigid_body_dofs

BooleanOptionKey const basic::options::OptionKeys::symmetry::initialize_rigid_body_dofs

extern

perturb_rigid_body_dofs

RealVectorOptionKey const basic::options::OptionKeys::symmetry::perturb_rigid_body_dofs

extern

Referenced by HDdesignMover::cloak_and_setup().

reweight_symm_interactions

RealOptionKey const basic::options::OptionKeys::symmetry::reweight_symm_interactions

extern

symmetric_rmsd

BooleanOptionKey const basic::options::OptionKeys::symmetry::symmetric_rmsd

extern

Referenced by main().

symmetry

BooleanOptionKey const basic::options::OptionKeys::symmetry::symmetry

extern

Referenced by add_symm_sf4(), add_symm_zns(), MirrorSymmTest::apply(), CustomMover::apply(), SymFixbbMover::apply(), CrystDesign::apply(), CrystRelax::apply(), design(), CrystDesign::design_cycle(), design_using_resfile(), CrystDesign::do_reversion(), dostuff(), TCDock::dump_pdb(), CrystDesign::filter_and_report(), find_buried_unsatisfied_polars(), find_clashes(), fixbb_design(), get_interface_energies(), CrystDesign::get_interface_residues(), CrystDesign::get_neighbor_residues(), get_perresE(), get_sasa(), get_sc(), CrystDesign::greedy_revert_unsats(), interface_energy_ratio(), main(), make_coiled_coil(), make_move_map(), my_main(), refine(), repack(), zinc1_homodimer_design::setup_movers(), SymDock_main_local(), symm_self_rep(), SymmAbRelaxTest(), SymmDataTest(), SymmSilentFileTest(), SymRBMover::SymRBMover(), and unsatisfied_buried_polars().

symmetry_definition

StringOptionKey const basic::options::OptionKeys::symmetry::symmetry_definition

extern

Referenced by ElecDensMinPackMinMover::apply(), MinTestMover::apply(), RelaxJobQueen::complete_larval_job_maturation(), dock(), dostuff(), TCDock::dump_pdb(), LoopBuild_main(), main(), my_main(), rebuild_test(), register_options(), run(), scheme_score(), and sicdock_thread_num().