basic::options::OptionKeys::helical_bundle_predict Namespace Reference

Variables
BooleanOptionKey const	helical_bundle_predict
StringOptionKey const	sequence_file
FileOptionKey const	helix_assignment_file
FileOptionKey const	psipred_file
RealOptionKey const	psipred_alpha_helix_prob_cutoff
RealOptionKey const	psipred_beta_strand_prob_cutoff
IntegerOptionKey const	num_simulated_annealing_rounds_centroid
IntegerOptionKey const	num_steps_per_simulated_annealing_round_centroid
RealOptionKey const	centroid_max_temperature
RealOptionKey const	centroid_min_temperature
BooleanOptionKey const	do_final_fullatom_refinement
IntegerOptionKey const	fast_relax_rounds
BooleanOptionKey const	find_disulfides
IntegerVectorOptionKey const	ignore_native_residues_in_rmsd
IntegerVectorOptionKey const	ignore_prediction_residues_in_rmsd

Variable Documentation

centroid_max_temperature

RealOptionKey const basic::options::OptionKeys::helical_bundle_predict::centroid_max_temperature

extern

centroid_min_temperature

RealOptionKey const basic::options::OptionKeys::helical_bundle_predict::centroid_min_temperature

extern

do_final_fullatom_refinement

BooleanOptionKey const basic::options::OptionKeys::helical_bundle_predict::do_final_fullatom_refinement

extern

fast_relax_rounds

IntegerOptionKey const basic::options::OptionKeys::helical_bundle_predict::fast_relax_rounds

extern

find_disulfides

BooleanOptionKey const basic::options::OptionKeys::helical_bundle_predict::find_disulfides

extern

helical_bundle_predict

BooleanOptionKey const basic::options::OptionKeys::helical_bundle_predict::helical_bundle_predict

extern

Referenced by main().

helix_assignment_file

FileOptionKey const basic::options::OptionKeys::helical_bundle_predict::helix_assignment_file

extern

Referenced by get_options_from_options_collection().

ignore_native_residues_in_rmsd

IntegerVectorOptionKey const basic::options::OptionKeys::helical_bundle_predict::ignore_native_residues_in_rmsd

extern

ignore_prediction_residues_in_rmsd

IntegerVectorOptionKey const basic::options::OptionKeys::helical_bundle_predict::ignore_prediction_residues_in_rmsd

extern

num_simulated_annealing_rounds_centroid

IntegerOptionKey const basic::options::OptionKeys::helical_bundle_predict::num_simulated_annealing_rounds_centroid

extern

num_steps_per_simulated_annealing_round_centroid

IntegerOptionKey const basic::options::OptionKeys::helical_bundle_predict::num_steps_per_simulated_annealing_round_centroid

extern

psipred_alpha_helix_prob_cutoff

RealOptionKey const basic::options::OptionKeys::helical_bundle_predict::psipred_alpha_helix_prob_cutoff

extern

psipred_beta_strand_prob_cutoff

RealOptionKey const basic::options::OptionKeys::helical_bundle_predict::psipred_beta_strand_prob_cutoff

extern

psipred_file

FileOptionKey const basic::options::OptionKeys::helical_bundle_predict::psipred_file

extern

Referenced by get_options_from_options_collection().

sequence_file

StringOptionKey const basic::options::OptionKeys::helical_bundle_predict::sequence_file

extern

Referenced by get_options_from_options_collection().