basic::options::OptionKeys::smhybrid Namespace Reference

Variables
BooleanOptionKey const	smhybrid
BooleanOptionKey const	add_cavities
BooleanOptionKey const	abinitio_design
BooleanOptionKey const	fa_refine
BooleanOptionKey const	virtual_nterm
BooleanOptionKey const	debug
BooleanOptionKey const	refine
BooleanOptionKey const	centroid_all_val
BooleanOptionKey const	subsubs_attract
BooleanOptionKey const	linker_cst
BooleanOptionKey const	pseudosym
BooleanOptionKey const	design_linker
BooleanOptionKey const	design
BooleanOptionKey const	restrict_design_to_interface
BooleanOptionKey const	restrict_design_to_subsub_interface
BooleanOptionKey const	design_hydrophobic
BooleanOptionKey const	add_metal_at_0
IntegerOptionKey const	nres_mono
IntegerOptionKey const	abinitio_cycles
IntegerOptionKey const	primary_subsubunit
IntegerOptionKey const	minbb
IntegerOptionKey const	switch_concert_sub
RealOptionKey const	temperature
BooleanOptionKey const	inter_subsub_cst
RealOptionKey const	rb_mag
FileOptionKey const	symm_def_template
FileOptionKey const	symm_def_template_reduced
IntegerVectorOptionKey const	attach_as_sc
IntegerVectorOptionKey const	attach_as_sc_sub
BooleanVectorOptionKey const	chainbreaks
StringVectorOptionKey const	design_res_files
StringVectorOptionKey const	fixed_res_files
StringVectorOptionKey const	frag_res_files
StringVectorOptionKey const	scattach_res_files
StringVectorOptionKey const	rep_edge_files
StringVectorOptionKey const	virtual_res_files
StringVectorOptionKey const	jumpcut_files
StringVectorOptionKey const	cst_sub_files
StringVectorOptionKey const	symm_file_tag
StringVectorOptionKey const	attach_atom
StringVectorOptionKey const	add_res_before
StringVectorOptionKey const	add_res_after
StringVectorOptionKey const	add_ss_before
StringVectorOptionKey const	add_ss_after
StringVectorOptionKey const	add_atom_at_cen
StringVectorOptionKey const	attach_rsd

Variable Documentation

abinitio_cycles

IntegerOptionKey const basic::options::OptionKeys::smhybrid::abinitio_cycles

extern

Referenced by doit(), and main().

abinitio_design

BooleanOptionKey const basic::options::OptionKeys::smhybrid::abinitio_design

extern

Referenced by cen_fold().

add_atom_at_cen

StringVectorOptionKey const basic::options::OptionKeys::smhybrid::add_atom_at_cen

extern

Referenced by PoseWrap::dump_pdb().

add_cavities

BooleanOptionKey const basic::options::OptionKeys::smhybrid::add_cavities

extern

Referenced by MatchSet::cross(), MatchSet::cross_homodimer(), PoseWrap::dump_pdb(), and run_3bpy().

add_metal_at_0

BooleanOptionKey const basic::options::OptionKeys::smhybrid::add_metal_at_0

extern

Referenced by PoseWrap::dump_pdb().

add_res_after

StringVectorOptionKey const basic::options::OptionKeys::smhybrid::add_res_after

extern

add_res_before

StringVectorOptionKey const basic::options::OptionKeys::smhybrid::add_res_before

extern

add_ss_after

StringVectorOptionKey const basic::options::OptionKeys::smhybrid::add_ss_after

extern

add_ss_before

StringVectorOptionKey const basic::options::OptionKeys::smhybrid::add_ss_before

extern

attach_as_sc

IntegerVectorOptionKey const basic::options::OptionKeys::smhybrid::attach_as_sc

extern

Referenced by posewrap_from_command_line().

attach_as_sc_sub

IntegerVectorOptionKey const basic::options::OptionKeys::smhybrid::attach_as_sc_sub

extern

Referenced by PoseWrap::add_floating_sc_csts().

attach_atom

StringVectorOptionKey const basic::options::OptionKeys::smhybrid::attach_atom

extern

Referenced by PoseWrap::PoseWrap(), and posewrap_from_command_line().

attach_rsd

StringVectorOptionKey const basic::options::OptionKeys::smhybrid::attach_rsd

extern

Referenced by main(), and posewrap_from_command_line().

centroid_all_val

BooleanOptionKey const basic::options::OptionKeys::smhybrid::centroid_all_val

extern

Referenced by PoseWrap::switch_to_cen(), and PoseWrap::switch_to_fa().

chainbreaks

BooleanVectorOptionKey const basic::options::OptionKeys::smhybrid::chainbreaks

extern

Referenced by main(), posewrap_from_command_line(), and register_options().

cst_sub_files

StringVectorOptionKey const basic::options::OptionKeys::smhybrid::cst_sub_files

extern

Referenced by PoseWrap::PoseWrap(), and posewrap_from_command_line().

debug

BooleanOptionKey const basic::options::OptionKeys::smhybrid::debug

extern

Referenced by PoseWrap::PoseWrap().

design

BooleanOptionKey const basic::options::OptionKeys::smhybrid::design

extern

Referenced by PoseWrap::update_designable_packable().

design_hydrophobic

BooleanOptionKey const basic::options::OptionKeys::smhybrid::design_hydrophobic

extern

Referenced by design(), and design_homodimer().

design_linker

BooleanOptionKey const basic::options::OptionKeys::smhybrid::design_linker

extern

Referenced by PoseWrap::update_designable_packable().

design_res_files

StringVectorOptionKey const basic::options::OptionKeys::smhybrid::design_res_files

extern

fa_refine

BooleanOptionKey const basic::options::OptionKeys::smhybrid::fa_refine

extern

Referenced by doit(), and flxbb_nobu().

fixed_res_files

StringVectorOptionKey const basic::options::OptionKeys::smhybrid::fixed_res_files

extern

frag_res_files

StringVectorOptionKey const basic::options::OptionKeys::smhybrid::frag_res_files

extern

inter_subsub_cst

BooleanOptionKey const basic::options::OptionKeys::smhybrid::inter_subsub_cst

extern

Referenced by PoseWrap::add_apcs_local().

jumpcut_files

StringVectorOptionKey const basic::options::OptionKeys::smhybrid::jumpcut_files

extern

linker_cst

BooleanOptionKey const basic::options::OptionKeys::smhybrid::linker_cst

extern

Referenced by PoseWrap::PoseWrap().

minbb

IntegerOptionKey const basic::options::OptionKeys::smhybrid::minbb

extern

Referenced by fa_refine_and_design().

nres_mono

IntegerOptionKey const basic::options::OptionKeys::smhybrid::nres_mono

extern

Referenced by fa_refine_and_design(), main(), and report().

primary_subsubunit

IntegerOptionKey const basic::options::OptionKeys::smhybrid::primary_subsubunit

extern

Referenced by PoseWrap::PoseWrap().

pseudosym

BooleanOptionKey const basic::options::OptionKeys::smhybrid::pseudosym

extern

Referenced by PoseWrap::PoseWrap().

rb_mag

RealOptionKey const basic::options::OptionKeys::smhybrid::rb_mag

extern

Referenced by cen_fold().

refine

BooleanOptionKey const basic::options::OptionKeys::smhybrid::refine

extern

Referenced by fa_refine_and_design(), and main().

rep_edge_files

StringVectorOptionKey const basic::options::OptionKeys::smhybrid::rep_edge_files

extern

restrict_design_to_interface

BooleanOptionKey const basic::options::OptionKeys::smhybrid::restrict_design_to_interface

extern

Referenced by PoseWrap::update_designable_packable().

restrict_design_to_subsub_interface

BooleanOptionKey const basic::options::OptionKeys::smhybrid::restrict_design_to_subsub_interface

extern

Referenced by PoseWrap::update_designable_packable().

scattach_res_files

StringVectorOptionKey const basic::options::OptionKeys::smhybrid::scattach_res_files

extern

smhybrid

BooleanOptionKey const basic::options::OptionKeys::smhybrid::smhybrid

extern

subsubs_attract

BooleanOptionKey const basic::options::OptionKeys::smhybrid::subsubs_attract

extern

Referenced by PoseWrap::PoseWrap().

switch_concert_sub

IntegerOptionKey const basic::options::OptionKeys::smhybrid::switch_concert_sub

extern

Referenced by cen_fold().

symm_def_template

FileOptionKey const basic::options::OptionKeys::smhybrid::symm_def_template

extern

Referenced by PoseWrap::PoseWrap(), and posewrap_from_command_line().

symm_def_template_reduced

FileOptionKey const basic::options::OptionKeys::smhybrid::symm_def_template_reduced

extern

Referenced by PoseWrap::PoseWrap(), and posewrap_from_command_line().

symm_file_tag

StringVectorOptionKey const basic::options::OptionKeys::smhybrid::symm_file_tag

extern

Referenced by PoseWrap::PoseWrap().

temperature

RealOptionKey const basic::options::OptionKeys::smhybrid::temperature

extern

Referenced by cen_fold().

virtual_nterm

BooleanOptionKey const basic::options::OptionKeys::smhybrid::virtual_nterm

extern

Referenced by PoseWrap::PoseWrap(), and PoseWrap::switch_to_cen().

virtual_res_files

StringVectorOptionKey const basic::options::OptionKeys::smhybrid::virtual_res_files

extern