| ab_dock_chains(std::string ab_dock_chains) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| ab_dock_chains_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| ab_info_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| AntibodyDesignMoverGenerator() | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| AntibodyDesignMoverGenerator(AntibodyInfoCOP ab_info) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| apply(core::pose::Pose &pose) | protocols::antibody::design::AntibodyDesignMoverGenerator | virtual |
| cartmin_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| cmd_line_operation_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| docking_scorefxn_high_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| docking_scorefxn_low_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| dualspace_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| ft_mover() const | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| ft_mover_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| generate_dock_high_res(core::pose::Pose const &pose) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| generate_dock_low_res(core::pose::Pose const &pose) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| generate_minimizer(core::pose::Pose &pose) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| generate_protocol_mover() const | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| generate_relax(core::pose::Pose &pose) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| generate_repack_antigen_ab_interface(Pose const &pose) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| generate_repack_cdrs(core::pose::Pose const &pose) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| get_cdrs_movemap_with_overhang(core::pose::Pose &pose, bool min_bb=true, bool min_sc=true, bool include_neighbor_sc=true, bool include_neighbor_bb=false) const | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| get_dock_tf() | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| get_movemap_from_task(core::pose::Pose const &pose, core::pack::task::PackerTaskCOP task) const | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| get_name() const | protocols::antibody::design::AntibodyDesignMoverGenerator | inlinevirtual |
| high_res_dock_inner_cycles_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| high_res_dock_outer_cycles_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| include_neighbor_sc_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| interface_detection_dis(core::Real interface_distance) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| interface_detection_dis() const | protocols::antibody::design::AntibodyDesignMoverGenerator | inline |
| interface_dis_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| interface_tf_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| loops_operation_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| min_interface_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| min_sc_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| model_cdrs_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| mover() const | protocols::antibody::design::AntibodyDesignMoverGenerator | virtual |
| mover_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| neighbor_detection_dis(core::Real neighbor_distance) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| neighbor_detection_dis() const | protocols::antibody::design::AntibodyDesignMoverGenerator | inline |
| neighbor_dis_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| overhang_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| read_command_line_options() | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| restrict_design_operation_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| scorefxn_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| set_as_mover(bool setting) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| set_as_mover_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| set_cartmin(bool cartmin) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| set_cdr(CDRNameEnum const cdr, bool setting) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| set_cdr_only(CDRNameEnum const cdr, bool setting) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| set_cdr_range(CDRNameEnum const cdr_start, CDRNameEnum const cdr_end, bool setting) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| set_cdrs(utility::vector1< bool > cdrs) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| set_defaults() | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| set_dock_high_res_scorefunction(core::scoring::ScoreFunctionCOP scorefxn) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| set_dock_low_res_scorefunction(core::scoring::ScoreFunctionCOP scorefxn) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| set_dualspace(bool dualspace) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| set_ft_mover(protocols::moves::ChangeFoldTreeMoverOP ft_mover) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| set_high_res_dock_inner_cycles(core::Size second_cycle=10) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| set_high_res_dock_outer_cycles(core::Size first_cycle=3) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| set_include_neighbor_sc(bool include_neighbor_sc) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| set_min_interface(bool min_interface) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| set_min_sc(bool min_sc) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| set_mover(protocols::moves::MoverOP mover) | protocols::antibody::design::AntibodyDesignMoverGenerator | virtual |
| set_scorefunction(core::scoring::ScoreFunctionCOP scorefxn) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| set_start_coord_csts(bool coord_csts) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| set_task_factory(core::pack::task::TaskFactoryOP tf) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| set_tf_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| setup_dock_foldtree(core::pose::Pose const &pose, protocols::moves::ChangeFoldTreeMover &ft_mover) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| setup_dock_high_res(core::pose::Pose const &pose, docking::DockMCMProtocolOP docker) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| setup_dock_low_res(core::pose::Pose const &pose, docking::DockingLowResOP docker) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| setup_general_min_foldtree(core::pose::Pose const &pose, protocols::moves::ChangeFoldTreeMover &ft_mover) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| setup_minimizer(core::pose::Pose &pose, minimization_packing::MinMoverOP min_mover) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| setup_relax(core::pose::Pose &pose, relax::FastRelaxOP rel) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| setup_repack_antigen_ab_interface(core::pose::Pose const &pose, minimization_packing::PackRotamersMoverOP packer) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| setup_repack_cdrs(core::pose::Pose const &pose, minimization_packing::PackRotamersMoverOP packer) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| setup_scorefxns() | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| setup_task_operations() | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| start_coord_csts_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| stem_size(core::Size overhang) | protocols::antibody::design::AntibodyDesignMoverGenerator | |
| tf_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| use_ft_mover_ | protocols::antibody::design::AntibodyDesignMoverGenerator | private |
| ~AntibodyDesignMoverGenerator() | protocols::antibody::design::AntibodyDesignMoverGenerator | virtual |
