basic::options::OptionKeys::tcrmodel Namespace Reference

Variables
BooleanOptionKey const	tcrmodel
FileOptionKey const	ignore_list
RealOptionKey const	blastp_identity_cutoff
RealOptionKey const	template_identity_cutoff
BooleanOptionKey const	include_ab_templates
BooleanOptionKey const	dump_templates
BooleanOptionKey const	skip_modeling
StringOptionKey const	ab_template_db_path
StringOptionKey const	tcr_template_db_path
BooleanOptionKey const	minimize_model
BooleanOptionKey const	relax_model
BooleanOptionKey const	remodel_loop_cdr3a
BooleanOptionKey const	remodel_loop_cdr3b
BooleanOptionKey const	remodel_tcr_cdr3a_loop
BooleanOptionKey const	remodel_tcr_cdr3b_loop
BooleanOptionKey const	refine_tcr_cdr3a_loop
BooleanOptionKey const	refine_tcr_cdr3b_loop
BooleanOptionKey const	remodel_tcr_cdr3_loops
BooleanOptionKey const	refine_tcr_cdr3_loops
BooleanOptionKey const	refine_all_tcr_cdr_loops
BooleanOptionKey const	use_user_templates
StringOptionKey const	alpha_framework_template_id
StringOptionKey const	beta_framework_template_id
StringOptionKey const	alpha_germline_template_id
StringOptionKey const	beta_germline_template_id
StringOptionKey const	alpha_cdr1_template_id
StringOptionKey const	beta_cdr1_template_id
StringOptionKey const	alpha_cdr2_template_id
StringOptionKey const	beta_cdr2_template_id
StringOptionKey const	alpha_cdr3_template_id
StringOptionKey const	beta_cdr3_template_id
StringOptionKey const	alpha_orientation_template_id
StringOptionKey const	beta_orientation_template_id
StringOptionKey const	alpha_framework_template_pdb
StringOptionKey const	beta_framework_template_pdb
StringOptionKey const	alpha_germline_template_pdb
StringOptionKey const	beta_germline_template_pdb
StringOptionKey const	alpha_cdr1_template_pdb
StringOptionKey const	beta_cdr1_template_pdb
StringOptionKey const	alpha_cdr2_template_pdb
StringOptionKey const	beta_cdr2_template_pdb
StringOptionKey const	alpha_cdr3_template_pdb
StringOptionKey const	beta_cdr3_template_pdb
StringOptionKey const	alpha_orientation_template_pdb
StringOptionKey const	beta_orientation_template_pdb
BooleanOptionKey const	use_alpha_germline_templates
BooleanOptionKey const	use_beta_germline_templates
BooleanOptionKey const	assign_cdr
StringOptionKey const	assign_cdr1a
StringOptionKey const	assign_cdr2a
StringOptionKey const	assign_cdr3a
StringOptionKey const	assign_cdr1b
StringOptionKey const	assign_cdr2b
StringOptionKey const	assign_cdr3b
StringOptionKey const	anarci_path

Variable Documentation

ab_template_db_path

StringOptionKey const basic::options::OptionKeys::tcrmodel::ab_template_db_path

extern

alpha_cdr1_template_id

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_cdr1_template_id

extern

alpha_cdr1_template_pdb

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_cdr1_template_pdb

extern

alpha_cdr2_template_id

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_cdr2_template_id

extern

alpha_cdr2_template_pdb

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_cdr2_template_pdb

extern

alpha_cdr3_template_id

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_cdr3_template_id

extern

alpha_cdr3_template_pdb

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_cdr3_template_pdb

extern

alpha_framework_template_id

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_framework_template_id

extern

alpha_framework_template_pdb

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_framework_template_pdb

extern

alpha_germline_template_id

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_germline_template_id

extern

alpha_germline_template_pdb

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_germline_template_pdb

extern

alpha_orientation_template_id

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_orientation_template_id

extern

alpha_orientation_template_pdb

StringOptionKey const basic::options::OptionKeys::tcrmodel::alpha_orientation_template_pdb

extern

anarci_path

StringOptionKey const basic::options::OptionKeys::tcrmodel::anarci_path

extern

assign_cdr

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::assign_cdr

extern

assign_cdr1a

StringOptionKey const basic::options::OptionKeys::tcrmodel::assign_cdr1a

extern

assign_cdr1b

StringOptionKey const basic::options::OptionKeys::tcrmodel::assign_cdr1b

extern

assign_cdr2a

StringOptionKey const basic::options::OptionKeys::tcrmodel::assign_cdr2a

extern

assign_cdr2b

StringOptionKey const basic::options::OptionKeys::tcrmodel::assign_cdr2b

extern

assign_cdr3a

StringOptionKey const basic::options::OptionKeys::tcrmodel::assign_cdr3a

extern

assign_cdr3b

StringOptionKey const basic::options::OptionKeys::tcrmodel::assign_cdr3b

extern

beta_cdr1_template_id

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_cdr1_template_id

extern

beta_cdr1_template_pdb

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_cdr1_template_pdb

extern

beta_cdr2_template_id

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_cdr2_template_id

extern

beta_cdr2_template_pdb

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_cdr2_template_pdb

extern

beta_cdr3_template_id

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_cdr3_template_id

extern

beta_cdr3_template_pdb

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_cdr3_template_pdb

extern

beta_framework_template_id

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_framework_template_id

extern

beta_framework_template_pdb

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_framework_template_pdb

extern

beta_germline_template_id

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_germline_template_id

extern

beta_germline_template_pdb

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_germline_template_pdb

extern

beta_orientation_template_id

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_orientation_template_id

extern

beta_orientation_template_pdb

StringOptionKey const basic::options::OptionKeys::tcrmodel::beta_orientation_template_pdb

extern

blastp_identity_cutoff

RealOptionKey const basic::options::OptionKeys::tcrmodel::blastp_identity_cutoff

extern

dump_templates

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::dump_templates

extern

ignore_list

FileOptionKey const basic::options::OptionKeys::tcrmodel::ignore_list

extern

include_ab_templates

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::include_ab_templates

extern

minimize_model

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::minimize_model

extern

refine_all_tcr_cdr_loops

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::refine_all_tcr_cdr_loops

extern

refine_tcr_cdr3_loops

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::refine_tcr_cdr3_loops

extern

refine_tcr_cdr3a_loop

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::refine_tcr_cdr3a_loop

extern

refine_tcr_cdr3b_loop

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::refine_tcr_cdr3b_loop

extern

relax_model

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::relax_model

extern

remodel_loop_cdr3a

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::remodel_loop_cdr3a

extern

remodel_loop_cdr3b

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::remodel_loop_cdr3b

extern

remodel_tcr_cdr3_loops

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::remodel_tcr_cdr3_loops

extern

remodel_tcr_cdr3a_loop

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::remodel_tcr_cdr3a_loop

extern

remodel_tcr_cdr3b_loop

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::remodel_tcr_cdr3b_loop

extern

skip_modeling

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::skip_modeling

extern

tcr_template_db_path

StringOptionKey const basic::options::OptionKeys::tcrmodel::tcr_template_db_path

extern

tcrmodel

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::tcrmodel

extern

template_identity_cutoff

RealOptionKey const basic::options::OptionKeys::tcrmodel::template_identity_cutoff

extern

use_alpha_germline_templates

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::use_alpha_germline_templates

extern

use_beta_germline_templates

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::use_beta_germline_templates

extern

use_user_templates

BooleanOptionKey const basic::options::OptionKeys::tcrmodel::use_user_templates

extern