auto-DRRAFTER_setup Namespace Reference

Functions
def	get_num_neighbors (tree, node)
def	get_neighbors (tree, node)
def	get_distance (p1, p2)
def	get_angle_btwn (v1, v2)
def	get_density_btwn_points (dens_map, point1, point2, npoints)
def	auto_setup_helices (args)

Variables
float	END_NODE_ANGLE_CUTOFF = 0.87
	Run variables. More...
string	FLAGS_TEMPLATE
	parser = argparse.ArgumentParser( description='Auto setup helices for DRRAFTER-RNA' )
	type
	float
	required
	str
	action
	default
	False
	help
	int
	True
	args = parser.parse_args()

Function Documentation

auto_setup_helices()

def auto-DRRAFTER_setup.auto_setup_helices

(

args

)

References DRRAFTER_util.better_reorder_pdb(), count, basic::options::OptionKeys::stepwise.enumerate, utility::options::OptionKeys::options.exit, DRRAFTER_util.extract_lowscore_decoys(), float, pyrosetta.tests.distributed.test_dask.format, get_angle_btwn(), get_density_btwn_points(), get_distance(), get_neighbors(), get_num_neighbors(), DRRAFTER_util.graph_from_ss(), ObjexxFCL.len(), DRRAFTER_util.make_tag_with_dashes(), basic::database.open(), print(), range, binder.replace(), DRRAFTER_util.residue_graph_from_ss(), DRRAFTER_util.rna_helix(), set(), str, and detail.strftime().

get_angle_btwn()

def auto-DRRAFTER_setup.get_angle_btwn	(		v1,
			v2
	)

Referenced by auto_setup_helices().

get_density_btwn_points()

def auto-DRRAFTER_setup.get_density_btwn_points	(		dens_map,
			point1,
			point2,
			npoints
	)

References int, and range.

Referenced by auto_setup_helices().

get_distance()

def auto-DRRAFTER_setup.get_distance	(		p1,
			p2
	)

Referenced by auto_setup_helices().

get_neighbors()

def auto-DRRAFTER_setup.get_neighbors	(		tree,
			node
	)

Referenced by auto_setup_helices().

get_num_neighbors()

def auto-DRRAFTER_setup.get_num_neighbors	(		tree,
			node
	)

Referenced by auto_setup_helices().

Variable Documentation

action

auto-DRRAFTER_setup.action

args

auto-DRRAFTER_setup.args = parser.parse_args()

default

auto-DRRAFTER_setup.default

END_NODE_ANGLE_CUTOFF

float auto-DRRAFTER_setup.END_NODE_ANGLE_CUTOFF = 0.87

Run variables.

False

auto-DRRAFTER_setup.False

FLAGS_TEMPLATE

string auto-DRRAFTER_setup.FLAGS_TEMPLATE

float

auto-DRRAFTER_setup.float

Referenced by auto_setup_helices().

help

auto-DRRAFTER_setup.help

int

auto-DRRAFTER_setup.int

Referenced by get_density_btwn_points().

parser

auto-DRRAFTER_setup.parser = argparse.ArgumentParser( description='Auto setup helices for DRRAFTER-RNA' )

required

auto-DRRAFTER_setup.required

str

auto-DRRAFTER_setup.str

Referenced by auto_setup_helices().

True

auto-DRRAFTER_setup.True

type

auto-DRRAFTER_setup.type