pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest Class Reference

Inheritance diagram for pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest:

Public Member Functions
def	setUpClass (cls)
def	tearDownClass (cls)
def	get_scores_dict (self, output_path)
def	setup_input_packed_pose (self)
def	test_detached_scores (self)
def	test_detached_scores_with_reserve_scores (self)
def	test_detached_scores_in_protocol (self)

Static Public Member Functions
def	create_task ()
def	identity_protocol (packed_pose, **kwargs)
def	reserved_scores_protocol (packed_pose, **kwargs)
def	add_detached_scores_protocol (packed_pose, **kwargs)

Public Attributes
	input_packed_pose
	workdir
	decoy_dir_name
	instance_kwargs

Static Private Attributes
int	_value = 1e1

Member Function Documentation

add_detached_scores_protocol()

def pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.add_detached_scores_protocol (   packed_pose, **  kwargs  )

static

create_task()

def pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.create_task ( )

static

get_scores_dict()

def pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.get_scores_dict	(		self,
			output_path
	)

References pyrosetta.distributed.cluster.core.PyRosettaCluster.decoy_dir_name, pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.decoy_dir_name, and ObjexxFCL.len().

Referenced by pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.test_detached_scores(), pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.test_detached_scores_in_protocol(), and pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.test_detached_scores_with_reserve_scores().

identity_protocol()

def pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.identity_protocol (   packed_pose, **  kwargs  )

static

reserved_scores_protocol()

def pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.reserved_scores_protocol (   packed_pose, **  kwargs  )

static

setup_input_packed_pose()

def pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.setup_input_packed_pose

(

self

)

References clone(), pyrosetta.distributed.cluster.core.PyRosettaCluster.input_packed_pose, pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.input_packed_pose, and pyrosetta.tests.distributed.cluster.test_smoke.TestBase.input_packed_pose.

Referenced by pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.test_detached_scores(), pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.test_detached_scores_in_protocol(), and pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.test_detached_scores_with_reserve_scores().

setUpClass()

def pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.setUpClass

(

cls

)

References pyrosetta.distributed.init().

tearDownClass()

def pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.tearDownClass

(

cls

)

References pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.workdir, pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.workdir, pyrosetta.tests.distributed.cluster.test_smoke.TestBase.workdir, test.T010_LoadPDB.LoadPDBTest.workdir, and test.T300_PyJobDistributor.TestPyJobDistributor.workdir.

test_detached_scores()

def pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.test_detached_scores

(

self

)

Test saving detached scores in PyRosettaCluster with/without compression.

References pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.get_scores_dict(), pyrosetta.distributed.cluster.core.PyRosettaCluster.input_packed_pose, pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.input_packed_pose, pyrosetta.tests.distributed.cluster.test_smoke.TestBase.input_packed_pose, pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.instance_kwargs, pyrosetta.tests.distributed.cluster.test_smoke.TestBase.instance_kwargs, pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.setup_input_packed_pose(), pyrosetta.distributed.cluster.serialization.update_scores(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.workdir, pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.workdir, pyrosetta.tests.distributed.cluster.test_smoke.TestBase.workdir, test.T010_LoadPDB.LoadPDBTest.workdir, and test.T300_PyJobDistributor.TestPyJobDistributor.workdir.

test_detached_scores_in_protocol()

def pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.test_detached_scores_in_protocol

(

self

)

Test saving detached scores in PyRosettaCluster protocol with/without compression.

References pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.get_scores_dict(), pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.instance_kwargs, pyrosetta.tests.distributed.cluster.test_smoke.TestBase.instance_kwargs, pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.setup_input_packed_pose(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.workdir, pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.workdir, pyrosetta.tests.distributed.cluster.test_smoke.TestBase.workdir, test.T010_LoadPDB.LoadPDBTest.workdir, and test.T300_PyJobDistributor.TestPyJobDistributor.workdir.

test_detached_scores_with_reserve_scores()

def pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.test_detached_scores_with_reserve_scores

(

self

)

Test saving detached scores in PyRosettaCluster with/without compression with `reserve_scores` decorator.

References pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.get_scores_dict(), pyrosetta.distributed.cluster.core.PyRosettaCluster.input_packed_pose, pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.input_packed_pose, pyrosetta.tests.distributed.cluster.test_smoke.TestBase.input_packed_pose, pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.instance_kwargs, pyrosetta.tests.distributed.cluster.test_smoke.TestBase.instance_kwargs, pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.setup_input_packed_pose(), pyrosetta.distributed.cluster.serialization.update_scores(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.workdir, pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.workdir, pyrosetta.tests.distributed.cluster.test_smoke.TestBase.workdir, test.T010_LoadPDB.LoadPDBTest.workdir, and test.T300_PyJobDistributor.TestPyJobDistributor.workdir.

Member Data Documentation

_value

int pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest._value = 1e1

staticprivate

decoy_dir_name

pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.decoy_dir_name

Referenced by pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.get_scores_dict().

input_packed_pose

pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.input_packed_pose

Referenced by pyrosetta.distributed.cluster.core.PyRosettaCluster._run(), pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.setup_input_packed_pose(), pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.test_detached_scores(), pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.test_detached_scores_with_reserve_scores(), pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest.test_generate_builtin_clients(), pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest.test_generate_multi_user_clients(), pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest.test_generate_partition_clients(), pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest.test_generate_user_client(), pyrosetta.tests.distributed.cluster.test_smoke.RuntimeTest.test_timing_multi_instance(), and pyrosetta.tests.distributed.cluster.test_smoke.RuntimeTest.test_timing_single_instance().

instance_kwargs

pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.instance_kwargs

Referenced by pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.test_detached_scores(), pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.test_detached_scores_in_protocol(), pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.test_detached_scores_with_reserve_scores(), pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest.test_generate_builtin_clients(), pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest.test_generate_multi_user_clients(), pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest.test_generate_partition_clients(), pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest.test_generate_user_client(), pyrosetta.tests.distributed.cluster.test_smoke.RuntimeTest.test_timing_multi_instance(), and pyrosetta.tests.distributed.cluster.test_smoke.RuntimeTest.test_timing_single_instance().

workdir

pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.workdir

Referenced by pyrosetta.tests.distributed.cluster.test_smoke.TestBase.tearDown(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.tearDownClass(), pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.tearDownClass(), test.T010_LoadPDB.LoadPDBTest.tearDownClass(), test.T300_PyJobDistributor.TestPyJobDistributor.tearDownClass(), pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.test_detached_scores(), pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.test_detached_scores_in_protocol(), pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.test_detached_scores_with_reserve_scores(), pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest.test_generate_builtin_clients(), pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest.test_generate_multi_user_clients(), pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest.test_generate_partition_clients(), pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest.test_generate_user_client(), test.T300_PyJobDistributor.TestPyJobDistributor.test_jd_serializable_scores(), test.T300_PyJobDistributor.TestPyJobDistributor.test_jd_unserializable_scores(), test.T010_LoadPDB.LoadPDBTest.test_roundtrip_file(), test.T010_LoadPDB.LoadPDBTest.test_roundtrip_pdb(), and test.T010_LoadPDB.LoadPDBTest.test_roundtrip_scored_pdb().

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The documentation for this class was generated from the following file:

• src/python/PyRosetta/src/pyrosetta/tests/distributed/cluster/test_smoke.py