basic::options::OptionKeys::willmatch Namespace Reference

Variables
BooleanOptionKey const	willmatch
StringVectorOptionKey const	write_reduced_matchset
RealOptionKey const	interface_size
RealOptionKey const	max_dis_any
RealOptionKey const	max_dis_all
RealOptionKey const	max_dis_hb
RealOptionKey const	min_dis_hb
RealOptionKey const	max_dis_hb_colinear
RealOptionKey const	max_dis_metal
RealOptionKey const	max_ang_metal
RealOptionKey const	clash_dis
RealOptionKey const	c2_linker_dist
RealOptionKey const	identical_match_dis
RealOptionKey const	chi1_increment
RealOptionKey const	chi2_increment
RealOptionKey const	c2_symm_increment
RealOptionKey const	cb_sasa_thresh
BooleanOptionKey const	design_interface
FileOptionKey const	chilist
FileOptionKey const	fixed_res
FileOptionKey const	native1
FileOptionKey const	native2
FileOptionKey const	exclude_res1
FileOptionKey const	exclude_res2
FileOptionKey const	taglist
IntegerVectorOptionKey const	residues
BooleanOptionKey const	symmetry_d2
BooleanOptionKey const	symmetry_c2_dock
IntegerVectorOptionKey const	splitwork
BooleanOptionKey const	exclude_ala
RealOptionKey const	match_overlap_dis
RealOptionKey const	match_overlap_ang
IntegerVectorOptionKey const	forbid_residues
RealVectorOptionKey const	poi
RealOptionKey const	poidis
BooleanOptionKey const	homodimer
RealOptionKey const	fa_dun_thresh

Variable Documentation

c2_linker_dist

RealOptionKey const basic::options::OptionKeys::willmatch::c2_linker_dist

extern

Referenced by MatchSet::cross().

c2_symm_increment

RealOptionKey const basic::options::OptionKeys::willmatch::c2_symm_increment

extern

Referenced by MatchSet::cross().

cb_sasa_thresh

RealOptionKey const basic::options::OptionKeys::willmatch::cb_sasa_thresh

extern

Referenced by design().

chi1_increment

RealOptionKey const basic::options::OptionKeys::willmatch::chi1_increment

extern

Referenced by main(), register_options(), run(), run_3bpy(), run_diiron_glu(), run_m8(), run_tyr_his(), and run_zn2his().

chi2_increment

RealOptionKey const basic::options::OptionKeys::willmatch::chi2_increment

extern

Referenced by main(), run(), run_3bpy(), run_diiron_glu(), run_m8(), run_tyr_his(), and run_zn2his().

chilist

FileOptionKey const basic::options::OptionKeys::willmatch::chilist

extern

Referenced by run_3bpy().

clash_dis

RealOptionKey const basic::options::OptionKeys::willmatch::clash_dis

extern

Referenced by run(), run_3bpy(), run_diiron_glu(), run_m8(), run_tyr_his(), and run_zn2his().

design_interface

BooleanOptionKey const basic::options::OptionKeys::willmatch::design_interface

extern

Referenced by design().

exclude_ala

BooleanOptionKey const basic::options::OptionKeys::willmatch::exclude_ala

extern

Referenced by design(), and design_homodimer().

exclude_res1

FileOptionKey const basic::options::OptionKeys::willmatch::exclude_res1

extern

Referenced by main(), run(), and run_3bpy().

exclude_res2

FileOptionKey const basic::options::OptionKeys::willmatch::exclude_res2

extern

Referenced by main().

fa_dun_thresh

RealOptionKey const basic::options::OptionKeys::willmatch::fa_dun_thresh

extern

Referenced by run().

fixed_res

FileOptionKey const basic::options::OptionKeys::willmatch::fixed_res

extern

Referenced by design(), and design_homodimer().

forbid_residues

IntegerVectorOptionKey const basic::options::OptionKeys::willmatch::forbid_residues

extern

Referenced by run(), and run_tyr_his().

homodimer

BooleanOptionKey const basic::options::OptionKeys::willmatch::homodimer

extern

Referenced by zinc2_homodimer_setup::apply(), zinc2_homodimer_setup::filter_clashes(), zinc2_homodimer_setup::filter_metal_geom(), zinc2_homodimer_setup::gridsearch_symmetric_alignments(), main(), zinc2_homodimer_setup::rollmove_to_inverse_C2_symmetry(), zinc2_homodimer_setup::setup_homodimer(), and zinc2_homodimer_setup::setup_metalsites().

identical_match_dis

RealOptionKey const basic::options::OptionKeys::willmatch::identical_match_dis

extern

interface_size

RealOptionKey const basic::options::OptionKeys::willmatch::interface_size

extern

Referenced by MatchSet::cross(), run(), and run_3bpy().

match_overlap_ang

RealOptionKey const basic::options::OptionKeys::willmatch::match_overlap_ang

extern

Referenced by run(), run_diiron_glu(), run_m8(), run_tyr_his(), and run_zn2his().

match_overlap_dis

RealOptionKey const basic::options::OptionKeys::willmatch::match_overlap_dis

extern

Referenced by run(), run_diiron_glu(), run_m8(), run_tyr_his(), and run_zn2his().

max_ang_metal

RealOptionKey const basic::options::OptionKeys::willmatch::max_ang_metal

extern

Referenced by run(), run_diiron_glu(), run_m8(), and run_zn2his().

max_dis_all

RealOptionKey const basic::options::OptionKeys::willmatch::max_dis_all

extern

Referenced by Tet4HMatchAligner::align_info().

max_dis_any

RealOptionKey const basic::options::OptionKeys::willmatch::max_dis_any

extern

Referenced by Tet4HMatchAligner::align_info().

max_dis_hb

RealOptionKey const basic::options::OptionKeys::willmatch::max_dis_hb

extern

Referenced by run_tyr_his().

max_dis_hb_colinear

RealOptionKey const basic::options::OptionKeys::willmatch::max_dis_hb_colinear

extern

Referenced by run_tyr_his().

max_dis_metal

RealOptionKey const basic::options::OptionKeys::willmatch::max_dis_metal

extern

Referenced by run(), run_diiron_glu(), run_m8(), and run_zn2his().

min_dis_hb

RealOptionKey const basic::options::OptionKeys::willmatch::min_dis_hb

extern

Referenced by run_tyr_his().

native1

FileOptionKey const basic::options::OptionKeys::willmatch::native1

extern

Referenced by main().

native2

FileOptionKey const basic::options::OptionKeys::willmatch::native2

extern

Referenced by main().

poi

RealVectorOptionKey const basic::options::OptionKeys::willmatch::poi

extern

Referenced by run().

poidis

RealOptionKey const basic::options::OptionKeys::willmatch::poidis

extern

Referenced by run().

residues

IntegerVectorOptionKey const basic::options::OptionKeys::willmatch::residues

extern

Referenced by get_scanres(), run(), run_diiron_glu(), run_m8(), run_tyr_his(), and run_zn2his().

splitwork

IntegerVectorOptionKey const basic::options::OptionKeys::willmatch::splitwork

extern

Referenced by main(), makesplitwork(), makesplitwork_3bpy(), run_diiron_glu(), run_m8(), run_tyr_his(), and run_zn2his().

symmetry_c2_dock

BooleanOptionKey const basic::options::OptionKeys::willmatch::symmetry_c2_dock

extern

Referenced by MatchSet::cross().

symmetry_d2

BooleanOptionKey const basic::options::OptionKeys::willmatch::symmetry_d2

extern

Referenced by main().

taglist

FileOptionKey const basic::options::OptionKeys::willmatch::taglist

extern

Referenced by main().

willmatch

BooleanOptionKey const basic::options::OptionKeys::willmatch::willmatch

extern

write_reduced_matchset

StringVectorOptionKey const basic::options::OptionKeys::willmatch::write_reduced_matchset

extern

Referenced by main().