demo.D020_Pose_scoring Namespace Reference

Functions
def	pose_scoring (pose, display_residues=[])

Variables
	extra_options
	parser = optparse.OptionParser()
	INTERPRETING RESULTS. More...
	dest
	default
	help
	options
	args
	pdb_filename = options.pdb_filename
	pose = Pose()
	residues = options.residues

Function Documentation

pose_scoring()

def demo.D020_Pose_scoring.pose_scoring	(		pose,
			display_residues = []
	)

Extracts and displays various score evaluations on the input  <pose>
    and its  <display_residues>  including:
    total score
    score term evaluations
    per-residue score
    radius of gyration (approximate)

References pyrosetta.io.create_score_function, pyrosetta.distributed.io.get_fa_scorefxn(), enumerate_junctions.int, ObjexxFCL.len(), ObjexxFCL.ljust(), print(), basic::options::OptionKeys::run::PyMOLMover.PyMOLMover, range, oop_conformations.scorefxn, str(), and ObjexxFCL.strip().

Variable Documentation

args

demo.D020_Pose_scoring.args

default

demo.D020_Pose_scoring.default

dest

demo.D020_Pose_scoring.dest

extra_options

demo.D020_Pose_scoring.extra_options

help

demo.D020_Pose_scoring.help

options

demo.D020_Pose_scoring.options

parser

demo.D020_Pose_scoring.parser = optparse.OptionParser()

INTERPRETING RESULTS.

COMMANDLINE COMPATIBILITY

pdb_filename

demo.D020_Pose_scoring.pdb_filename = options.pdb_filename

pose

demo.D020_Pose_scoring.pose = Pose()

residues

list demo.D020_Pose_scoring.residues = options.residues