basic::options::OptionKeys::pocket_grid Namespace Reference

Variables
BooleanOptionKey const	pocket_grid
RealOptionKey const	pocket_grid_size
RealOptionKey const	pocket_grid_size_x
RealOptionKey const	pocket_grid_size_y
RealOptionKey const	pocket_grid_size_z
RealOptionKey const	pocket_grid_spacing
RealOptionKey const	pocket_max_spacing
RealOptionKey const	pocket_min_size
RealOptionKey const	pocket_max_size
RealOptionKey const	pocket_probe_radius
StringOptionKey const	central_relax_pdb_num
IntegerOptionKey const	pocket_ntrials
IntegerOptionKey const	pocket_num_angles
BooleanOptionKey const	pocket_side
BooleanOptionKey const	pocket_dump_pdbs
BooleanOptionKey const	pocket_dump_exemplars
BooleanOptionKey const	pocket_filter_by_exemplar
BooleanOptionKey const	pocket_limit_exemplar_color
BooleanOptionKey const	pocket_limit_small_exemplars
BooleanOptionKey const	pocket_dump_rama
BooleanOptionKey const	pocket_restrict_size
BooleanOptionKey const	pocket_ignore_buried
BooleanOptionKey const	pocket_only_buried
BooleanOptionKey const	pocket_psp
BooleanOptionKey const	pocket_sps
BooleanOptionKey const	pocket_search13
RealOptionKey const	pocket_surface_score
RealOptionKey const	pocket_surface_dist
RealOptionKey const	pocket_buried_score
RealOptionKey const	pocket_buried_dist
RealOptionKey const	pocket_exemplar_vdw_pen
BooleanOptionKey const	pocket_debug_output
BooleanOptionKey const	dump_pocketGrid
BooleanOptionKey const	dump_Grid
BooleanOptionKey const	extend_eggshell
RealOptionKey const	extend_eggshell_dist
RealOptionKey const	extra_eggshell_dist
RealOptionKey const	eggshell_dist
BooleanOptionKey const	reduce_rays
BooleanOptionKey const	pocket_static_grid
BooleanOptionKey const	dump_espGrid
BooleanOptionKey const	dump_connollySurface
RealOptionKey const	esp_buffer_dist
BooleanOptionKey const	round_pocketGrid_center

Variable Documentation

central_relax_pdb_num

StringOptionKey const basic::options::OptionKeys::pocket_grid::central_relax_pdb_num

extern

Referenced by ExemplarMover::apply(), and main().

dump_connollySurface

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::dump_connollySurface

extern

dump_espGrid

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::dump_espGrid

extern

dump_Grid

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::dump_Grid

extern

dump_pocketGrid

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::dump_pocketGrid

extern

Referenced by main().

eggshell_dist

RealOptionKey const basic::options::OptionKeys::pocket_grid::eggshell_dist

extern

esp_buffer_dist

RealOptionKey const basic::options::OptionKeys::pocket_grid::esp_buffer_dist

extern

extend_eggshell

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::extend_eggshell

extern

extend_eggshell_dist

RealOptionKey const basic::options::OptionKeys::pocket_grid::extend_eggshell_dist

extern

extra_eggshell_dist

RealOptionKey const basic::options::OptionKeys::pocket_grid::extra_eggshell_dist

extern

pocket_buried_dist

RealOptionKey const basic::options::OptionKeys::pocket_grid::pocket_buried_dist

extern

pocket_buried_score

RealOptionKey const basic::options::OptionKeys::pocket_grid::pocket_buried_score

extern

pocket_debug_output

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::pocket_debug_output

extern

pocket_dump_exemplars

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::pocket_dump_exemplars

extern

Referenced by main().

pocket_dump_pdbs

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::pocket_dump_pdbs

extern

Referenced by ExemplarMover::apply(), and main().

pocket_dump_rama

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::pocket_dump_rama

extern

pocket_exemplar_vdw_pen

RealOptionKey const basic::options::OptionKeys::pocket_grid::pocket_exemplar_vdw_pen

extern

pocket_filter_by_exemplar

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::pocket_filter_by_exemplar

extern

pocket_grid

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::pocket_grid

extern

pocket_grid_size

RealOptionKey const basic::options::OptionKeys::pocket_grid::pocket_grid_size

extern

pocket_grid_size_x

RealOptionKey const basic::options::OptionKeys::pocket_grid::pocket_grid_size_x

extern

Referenced by main().

pocket_grid_size_y

RealOptionKey const basic::options::OptionKeys::pocket_grid::pocket_grid_size_y

extern

Referenced by main().

pocket_grid_size_z

RealOptionKey const basic::options::OptionKeys::pocket_grid::pocket_grid_size_z

extern

Referenced by main().

pocket_grid_spacing

RealOptionKey const basic::options::OptionKeys::pocket_grid::pocket_grid_spacing

extern

Referenced by main().

pocket_ignore_buried

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::pocket_ignore_buried

extern

pocket_limit_exemplar_color

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::pocket_limit_exemplar_color

extern

pocket_limit_small_exemplars

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::pocket_limit_small_exemplars

extern

pocket_max_size

RealOptionKey const basic::options::OptionKeys::pocket_grid::pocket_max_size

extern

pocket_max_spacing

RealOptionKey const basic::options::OptionKeys::pocket_grid::pocket_max_spacing

extern

pocket_min_size

RealOptionKey const basic::options::OptionKeys::pocket_grid::pocket_min_size

extern

pocket_ntrials

IntegerOptionKey const basic::options::OptionKeys::pocket_grid::pocket_ntrials

extern

Referenced by main().

pocket_num_angles

IntegerOptionKey const basic::options::OptionKeys::pocket_grid::pocket_num_angles

extern

Referenced by ExemplarMover::apply().

pocket_only_buried

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::pocket_only_buried

extern

pocket_probe_radius

RealOptionKey const basic::options::OptionKeys::pocket_grid::pocket_probe_radius

extern

pocket_psp

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::pocket_psp

extern

pocket_restrict_size

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::pocket_restrict_size

extern

pocket_search13

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::pocket_search13

extern

pocket_side

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::pocket_side

extern

pocket_sps

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::pocket_sps

extern

pocket_static_grid

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::pocket_static_grid

extern

pocket_surface_dist

RealOptionKey const basic::options::OptionKeys::pocket_grid::pocket_surface_dist

extern

pocket_surface_score

RealOptionKey const basic::options::OptionKeys::pocket_grid::pocket_surface_score

extern

reduce_rays

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::reduce_rays

extern

round_pocketGrid_center

BooleanOptionKey const basic::options::OptionKeys::pocket_grid::round_pocketGrid_center

extern