remodel::staged_sampling Namespace Reference

Functions
BooleanOptionKey const	staged_sampling ("remodel:staged_sampling")
StringOptionKey const	loop_9mer_score_file ("remodel:staged_sampling:loop_9mer_score_file")
StringOptionKey const	loop_3mer_score_file ("remodel:staged_sampling:loop_3mer_score_file")
StringOptionKey const	all_9mer_score_file ("remodel:staged_sampling:all_9mer_score_file")
StringOptionKey const	all_3mer_score_file ("remodel:staged_sampling:all_3mer_score_file")
IntegerOptionKey const	loop_9mer_cycles ("remodel:staged_sampling:loop_9mer_cycles")
IntegerOptionKey const	loop_3mer_cycles ("remodel:staged_sampling:loop_3mer_cycles")
IntegerOptionKey const	all_9mer_cycles ("remodel:staged_sampling:all_9mer_cycles")
IntegerOptionKey const	all_3mer_cycles ("remodel:staged_sampling:all_3mer_cycles")
BooleanOptionKey const	fa_mode ("remodel:staged_sampling:fa_mode")
BooleanOptionKey const	fa_relax_moves ("remodel:staged_sampling:fa_relax_moves")
BooleanOptionKey const	loop_btw_parametric_components ("remodel:staged_sampling:loop_btw_parametric_components")
BooleanOptionKey const	pre_centroid ("remodel:staged_sampling:pre_centroid")
BooleanOptionKey const	sample_over_loops ("remodel:staged_sampling:sample_over_loops")
BooleanOptionKey const	small_moves ("remodel:staged_sampling:small_moves")
StringOptionKey const	starting_sequence ("remodel:staged_sampling:starting_sequence")
FileOptionKey const	starting_pdb ("remodel:staged_sampling:starting_pdb")
StringOptionKey const	starting_non_canonical ("remodel:staged_sampling:starting_non_canonical")
BooleanOptionKey const	start_w_ideal_helices ("remodel:staged_sampling:start_w_ideal_helices")
BooleanOptionKey const	sym_move ("remodel:staged_sampling:sym_move")
FileOptionKey const	residues_to_sample ("remodel:staged_sampling:residues_to_sample")
BooleanOptionKey const	require_frags_match_blueprint ("remodel:staged_sampling:require_frags_match_blueprint")

Function Documentation

all_3mer_cycles()

IntegerOptionKey const remodel::staged_sampling::all_3mer_cycles

(

"remodel:staged_sampling:all_3mer_cycles"

)

References staged_sampling().

all_3mer_score_file()

StringOptionKey const remodel::staged_sampling::all_3mer_score_file

(

"remodel:staged_sampling:all_3mer_score_file"

)

References staged_sampling().

all_9mer_cycles()

IntegerOptionKey const remodel::staged_sampling::all_9mer_cycles

(

"remodel:staged_sampling:all_9mer_cycles"

)

References staged_sampling().

all_9mer_score_file()

StringOptionKey const remodel::staged_sampling::all_9mer_score_file

(

"remodel:staged_sampling:all_9mer_score_file"

)

References staged_sampling().

fa_mode()

BooleanOptionKey const remodel::staged_sampling::fa_mode

(

"remodel:staged_sampling:fa_mode"

)

References staged_sampling().

fa_relax_moves()

BooleanOptionKey const remodel::staged_sampling::fa_relax_moves

(

"remodel:staged_sampling:fa_relax_moves"

)

References staged_sampling().

loop_3mer_cycles()

IntegerOptionKey const remodel::staged_sampling::loop_3mer_cycles

(

"remodel:staged_sampling:loop_3mer_cycles"

)

References staged_sampling().

loop_3mer_score_file()

StringOptionKey const remodel::staged_sampling::loop_3mer_score_file

(

"remodel:staged_sampling:loop_3mer_score_file"

)

References staged_sampling().

loop_9mer_cycles()

IntegerOptionKey const remodel::staged_sampling::loop_9mer_cycles

(

"remodel:staged_sampling:loop_9mer_cycles"

)

References staged_sampling().

loop_9mer_score_file()

StringOptionKey const remodel::staged_sampling::loop_9mer_score_file

(

"remodel:staged_sampling:loop_9mer_score_file"

)

References staged_sampling().

loop_btw_parametric_components()

BooleanOptionKey const remodel::staged_sampling::loop_btw_parametric_components

(

"remodel:staged_sampling:loop_btw_parametric_components"

)

References staged_sampling().

pre_centroid()

BooleanOptionKey const remodel::staged_sampling::pre_centroid

(

"remodel:staged_sampling:pre_centroid"

)

References staged_sampling().

require_frags_match_blueprint()

BooleanOptionKey const remodel::staged_sampling::require_frags_match_blueprint

(

"remodel:staged_sampling:require_frags_match_blueprint"

)

References staged_sampling().

residues_to_sample()

FileOptionKey const remodel::staged_sampling::residues_to_sample

(

"remodel:staged_sampling:residues_to_sample"

)

References staged_sampling().

sample_over_loops()

BooleanOptionKey const remodel::staged_sampling::sample_over_loops

(

"remodel:staged_sampling:sample_over_loops"

)

References staged_sampling().

small_moves()

BooleanOptionKey const remodel::staged_sampling::small_moves

(

"remodel:staged_sampling:small_moves"

)

References staged_sampling().

staged_sampling()

BooleanOptionKey const remodel::staged_sampling::staged_sampling

(

"remodel:staged_sampling"

)

Referenced by all_3mer_cycles(), all_3mer_score_file(), all_9mer_cycles(), all_9mer_score_file(), fa_mode(), fa_relax_moves(), loop_3mer_cycles(), loop_3mer_score_file(), loop_9mer_cycles(), loop_9mer_score_file(), loop_btw_parametric_components(), pre_centroid(), require_frags_match_blueprint(), residues_to_sample(), sample_over_loops(), small_moves(), start_w_ideal_helices(), starting_non_canonical(), starting_pdb(), starting_sequence(), and sym_move().

start_w_ideal_helices()

BooleanOptionKey const remodel::staged_sampling::start_w_ideal_helices

(

"remodel:staged_sampling:start_w_ideal_helices"

)

References staged_sampling().

starting_non_canonical()

StringOptionKey const remodel::staged_sampling::starting_non_canonical

(

"remodel:staged_sampling:starting_non_canonical"

)

References staged_sampling().

starting_pdb()

FileOptionKey const remodel::staged_sampling::starting_pdb

(

"remodel:staged_sampling:starting_pdb"

)

References staged_sampling().

starting_sequence()

StringOptionKey const remodel::staged_sampling::starting_sequence

(

"remodel:staged_sampling:starting_sequence"

)

References staged_sampling().

sym_move()

BooleanOptionKey const remodel::staged_sampling::sym_move

(

"remodel:staged_sampling:sym_move"

)

References staged_sampling().