disulfide_filter.cc File Reference

Outputs a list of residue pairs which are likely candidates for disulfide bonds. More...

#include <devel/init.hh>
#include <utility/vector1.hh>
#include <fstream>
#include <basic/options/util.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <core/pose/Pose.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/pose/util.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <apps/pilot/blivens/disulfides.hh>
#include <core/import_pose/import_pose.hh>
#include <basic/Tracer.hh>

Functions
int	usage (char *msg)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("pilot_apps.blivens.disulfide_filter")

Detailed Description

Outputs a list of residue pairs which are likely candidates for disulfide bonds.

Author

Spencer Bliven

Date

Created November 2008

Command Line

disulfide_filter -s input.pdb -o output.txt -database db 

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, basic::options::OptionKeys::in::file::dssp, test.T009_Exceptions::e, create_a3b_hbs::i, basic::init(), create_a3b_hbs::j, in::file::l(), out::file::o(), option, erraser_single_res_analysis::out, lactamize::outfile, pdbs, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file(), in::file::s(), basic::options::start_files(), TR, usage(), and basic::options::OptionKeys::inout::dbms::user.

usage()

int usage

(

char *

msg

)

References utility::options::OptionKeys::options::exit, and TR.

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("pilot_apps.blivens.disulfide_filter") ( "pilot_apps.blivens.disulfide_filter"  )

static

Referenced by main(), and usage().