basic::options::OptionKeys::backrub Namespace Reference

Variables
BooleanOptionKey const	backrub
IntegerVectorOptionKey const	pivot_residues
StringVectorOptionKey const	pivot_atoms
IntegerOptionKey const	min_atoms
IntegerOptionKey const	max_atoms
IntegerOptionKey const	ntrials
RealOptionKey const	sc_prob
RealOptionKey const	sm_prob
RealOptionKey const	sc_prob_uniform
RealOptionKey const	sc_prob_withinrot
RealOptionKey const	mc_kt
RealOptionKey const	mm_bend_weight
BooleanOptionKey const	initial_pack
FileOptionKey const	minimize_movemap
BooleanOptionKey const	trajectory
BooleanOptionKey const	trajectory_gz
IntegerOptionKey const	trajectory_stride

Variable Documentation

backrub

BooleanOptionKey const basic::options::OptionKeys::backrub::backrub

extern

Referenced by main(), repack_cluster(), and repack_step().

initial_pack

BooleanOptionKey const basic::options::OptionKeys::backrub::initial_pack

extern

Referenced by main(), and my_main().

max_atoms

IntegerOptionKey const basic::options::OptionKeys::backrub::max_atoms

extern

Referenced by ExemplarMover::apply(), main(), and my_main().

mc_kt

RealOptionKey const basic::options::OptionKeys::backrub::mc_kt

extern

Referenced by my_main().

min_atoms

IntegerOptionKey const basic::options::OptionKeys::backrub::min_atoms

extern

Referenced by ExemplarMover::apply(), main(), and my_main().

minimize_movemap

FileOptionKey const basic::options::OptionKeys::backrub::minimize_movemap

extern

Referenced by main(), and my_main().

mm_bend_weight

RealOptionKey const basic::options::OptionKeys::backrub::mm_bend_weight

extern

Referenced by main(), and my_main().

ntrials

IntegerOptionKey const basic::options::OptionKeys::backrub::ntrials

extern

Referenced by do_backrub(), do_KIC(), doit(), protocols::jd2::RECONMPIJobDistributor::go(), main(), my_main(), and Bola::random_move().

pivot_atoms

StringVectorOptionKey const basic::options::OptionKeys::backrub::pivot_atoms

extern

Referenced by HbondZinc::hbond_constraint(), and my_main().

pivot_residues

IntegerVectorOptionKey const basic::options::OptionKeys::backrub::pivot_residues

extern

Referenced by HbondZinc::hbond_constraint(), and use_backrub().

sc_prob

RealOptionKey const basic::options::OptionKeys::backrub::sc_prob

extern

Referenced by main(), and my_main().

sc_prob_uniform

RealOptionKey const basic::options::OptionKeys::backrub::sc_prob_uniform

extern

Referenced by main(), and my_main().

sc_prob_withinrot

RealOptionKey const basic::options::OptionKeys::backrub::sc_prob_withinrot

extern

Referenced by main(), and my_main().

sm_prob

RealOptionKey const basic::options::OptionKeys::backrub::sm_prob

extern

Referenced by main(), and my_main().

trajectory

BooleanOptionKey const basic::options::OptionKeys::backrub::trajectory

extern

Referenced by my_main().

trajectory_gz

BooleanOptionKey const basic::options::OptionKeys::backrub::trajectory_gz

extern

Referenced by my_main().

trajectory_stride

IntegerOptionKey const basic::options::OptionKeys::backrub::trajectory_stride

extern

Referenced by main(), and my_main().