basic::options::OptionKeys::mh Namespace Reference

Namespaces
	dump
	filter
	harvest
	match
	path
	score

Variables
BooleanOptionKey const	mh
StringOptionKey const	motif_out_file
FileVectorOptionKey const	harvest_motifs
FileVectorOptionKey const	print_motifs
FileVectorOptionKey const	remove_duplicates
FileVectorOptionKey const	dump_motif_pdbs
FileVectorOptionKey const	merge_motifs
FileVectorOptionKey const	merge_scores
BooleanOptionKey const	merge_motifs_one_per_bin
BooleanOptionKey const	gen_reverse_motifs_on_load
FileVectorOptionKey const	dump_input_pdb
FileVectorOptionKey const	score_pdbs
FileVectorOptionKey const	sequence_recovery
FileVectorOptionKey const	explicit_motif_score
FileVectorOptionKey const	harvest_scores
FileOptionKey const	print_scores
FileVectorOptionKey const	dump_matching_motifs
BooleanOptionKey const	score_across_chains_only
BooleanOptionKey const	normalize_score_ncontact
IntegerOptionKey const	harvest_motifs_min_hh_ends
BooleanOptionKey const	ignore_io_errors
RealOptionKey const	motif_match_radius
RealVectorOptionKey const	merge_similar_motifs

Variable Documentation

dump_input_pdb

FileVectorOptionKey const basic::options::OptionKeys::mh::dump_input_pdb

extern

Referenced by main(), and sicdock_thread_num().

dump_matching_motifs

FileVectorOptionKey const basic::options::OptionKeys::mh::dump_matching_motifs

extern

Referenced by sicdock_thread_num().

dump_motif_pdbs

FileVectorOptionKey const basic::options::OptionKeys::mh::dump_motif_pdbs

extern

Referenced by sicdock_thread_num().

explicit_motif_score

FileVectorOptionKey const basic::options::OptionKeys::mh::explicit_motif_score

extern

gen_reverse_motifs_on_load

BooleanOptionKey const basic::options::OptionKeys::mh::gen_reverse_motifs_on_load

extern

harvest_motifs

FileVectorOptionKey const basic::options::OptionKeys::mh::harvest_motifs

extern

Referenced by harvest_motifs(), main(), and sicdock_thread_num().

harvest_motifs_min_hh_ends

IntegerOptionKey const basic::options::OptionKeys::mh::harvest_motifs_min_hh_ends

extern

harvest_scores

FileVectorOptionKey const basic::options::OptionKeys::mh::harvest_scores

extern

Referenced by harvest_scores(), main(), and sicdock_thread_num().

ignore_io_errors

BooleanOptionKey const basic::options::OptionKeys::mh::ignore_io_errors

extern

merge_motifs

FileVectorOptionKey const basic::options::OptionKeys::mh::merge_motifs

extern

Referenced by main(), merge_motifs(), and sicdock_thread_num().

merge_motifs_one_per_bin

BooleanOptionKey const basic::options::OptionKeys::mh::merge_motifs_one_per_bin

extern

merge_scores

FileVectorOptionKey const basic::options::OptionKeys::mh::merge_scores

extern

Referenced by sicdock_thread_num().

merge_similar_motifs

RealVectorOptionKey const basic::options::OptionKeys::mh::merge_similar_motifs

extern

mh

BooleanOptionKey const basic::options::OptionKeys::mh::mh

extern

Referenced by sicdock_thread_num().

motif_match_radius

RealOptionKey const basic::options::OptionKeys::mh::motif_match_radius

extern

motif_out_file

StringOptionKey const basic::options::OptionKeys::mh::motif_out_file

extern

Referenced by harvest_motifs(), harvest_scores(), main(), merge_motifs(), and sicdock_thread_num().

normalize_score_ncontact

BooleanOptionKey const basic::options::OptionKeys::mh::normalize_score_ncontact

extern

print_motifs

FileVectorOptionKey const basic::options::OptionKeys::mh::print_motifs

extern

Referenced by main(), print_motifs(), and sicdock_thread_num().

print_scores

FileOptionKey const basic::options::OptionKeys::mh::print_scores

extern

Referenced by main(), print_scores(), and sicdock_thread_num().

remove_duplicates

FileVectorOptionKey const basic::options::OptionKeys::mh::remove_duplicates

extern

Referenced by sicdock_thread_num().

score_across_chains_only

BooleanOptionKey const basic::options::OptionKeys::mh::score_across_chains_only

extern

score_pdbs

FileVectorOptionKey const basic::options::OptionKeys::mh::score_pdbs

extern

sequence_recovery

FileVectorOptionKey const basic::options::OptionKeys::mh::sequence_recovery

extern