Referenced by A3BHbsCreatorMover::A3BHbsCreatorMover(), protocols::abinitio::JumpSpecificAbrelax::add_constraints(), add_constraints(), add_coordinate_constraints(), add_dhc(), PoseWrap::add_floating_sc_csts(), A3BHbsCreatorMover::add_hbond_and_omega_constraints_starting_at_seqpos(), ConstraintConfig::add_sym_cst(), addcyclicconstraints(), ConstraintMinimizer::apply(), InteractionDistMinimizer::apply(), A3BHbsCreatorMover::apply(), LDConverterMover::apply(), FastThreadingMover::apply(), TestQuickRelaxMover::apply(), ConstraintConfig::apply_bb_csts(), ConstraintConfig::apply_cen_csts(), ConstraintConfig::apply_dcsts(), ConstraintConfig::apply_fa_csts(), protocols::jd2::RECONMPIJobDistributor::apply_linking_constraints(), atom_vdw_test(), backrub_protocol(), build_next_nucleotide_test(), CA_cst_generator(), ca_to_allatom_main(), capri_t033_trim_dock_test(), coarse_rna_denovo_test(), constrain_loop_ends(), HbondZinc::constrain_zinc(), constraint_set_slice(), copyresidueposition(), create_dihedral_constraint(), cyclize_pose(), derive(), dinucleotide_test(), dna_dr_loop_test(), dna_nbr_radii_test(), do_erraser2(), dock(), doit(), fixbb_design(), PoseWrap::get_closest_res_for_sc_attach(), hard_minimize(), HbondZinc::hbond_constraint(), hermann_phase_two_minimize(), idealize_tf_pose(), HECTAllMover::init_on_new_input(), juke_sam_test(), lariat_modeling(), loop_closure_test(), loop_modeling_test(), loop_rebuilding_test(), LoopBuild_main(), main(), minimize_protocol(), minimize_test(), modeler_closure_test(), mutate_residues_wrapper(), output_constraints(), parse_pathway_test(), peptide_plane_test(), peptide_plane_test_OLD(), PoseWrap::PoseWrap(), prepare_start_model(), put_constraints_on_helix(), rebuild_centroid_test(), rebuild_test(), refine(), region_constraint_score(), region_score(), relax_with_restraints_on_constres(), repack(), repack_test(), PoseWrap::replace_scattach_res(), report(), reset_sfxn(), rna_assemble_all_combinations_test(), rna_assemble_test(), rna_fullatom_minimize_test(), rotamerize_rna_test(), run(), run_mc(), RunPepSpec(), set_pep_cst(), set_pep_csts(), setup_CA_constraints(), setup_constraints(), setup_favor_native(), setup_hotspot_filter(), zinc1_homodimer_design::setup_metalsite_constraints(), setup_rna_base_pair_constraints(), setup_rna_chainbreak_constraints(), setup_sam_constraints(), setup_t469_zn_tether(), zinc2_homodimer_design::setup_taskfactory_scorefunction_movers(), spinner_test(), stepwise_template_test(), target_constraints(), HDdesignMover::task_constraint_setup(), test_suck_res(), HECTMover::ubq_constraints(), update_constraints(), vary_bond_length(), vary_geometry_backbone(), vary_geometry_RNA(), and vary_geometry_sidechains().
