basic::options::OptionKeys::dna::design Namespace Reference

Namespaces
	reversion
	specificity

Variables
BooleanOptionKey const	design
BooleanOptionKey const	output_unbound_pdb
RealOptionKey const	z_cutoff
StringOptionKey const	protein_scan
StringOptionKey const	checkpoint
BooleanOptionKey const	minimize
StringVectorOptionKey const	dna_defs
StringOptionKey const	dna_defs_file
BooleanOptionKey const	nopdb
BooleanOptionKey const	designable_second_shell
BooleanOptionKey const	base_contacts_only
IntegerOptionKey const	probe_specificity
BooleanOptionKey const	reversion_scan
BooleanOptionKey const	binding
RealOptionKey const	Boltz_temp
BooleanOptionKey const	repack_only
BooleanOptionKey const	sparse_pdb_output

Variable Documentation

base_contacts_only

BooleanOptionKey const basic::options::OptionKeys::dna::design::base_contacts_only

extern

binding

BooleanOptionKey const basic::options::OptionKeys::dna::design::binding

extern

Referenced by binder::ClassBinder::request_bindings_and_skipping(), binder::EnumBinder::request_bindings_and_skipping(), and binder::FunctionBinder::request_bindings_and_skipping().

Boltz_temp

RealOptionKey const basic::options::OptionKeys::dna::design::Boltz_temp

extern

checkpoint

StringOptionKey const basic::options::OptionKeys::dna::design::checkpoint

extern

Referenced by load_checkpoint(), run(), and write_checkpoint().

design

BooleanOptionKey const basic::options::OptionKeys::dna::design::design

extern

designable_second_shell

BooleanOptionKey const basic::options::OptionKeys::dna::design::designable_second_shell

extern

dna_defs

StringVectorOptionKey const basic::options::OptionKeys::dna::design::dna_defs

extern

Referenced by dna_motif_matcher().

dna_defs_file

StringOptionKey const basic::options::OptionKeys::dna::design::dna_defs_file

extern

minimize

BooleanOptionKey const basic::options::OptionKeys::dna::design::minimize

extern

Referenced by dsRNA_grow::apply(), main(), motif_dna_packer_design(), and score_and_minimize().

nopdb

BooleanOptionKey const basic::options::OptionKeys::dna::design::nopdb

extern

Referenced by main().

output_unbound_pdb

BooleanOptionKey const basic::options::OptionKeys::dna::design::output_unbound_pdb

extern

probe_specificity

IntegerOptionKey const basic::options::OptionKeys::dna::design::probe_specificity

extern

protein_scan

StringOptionKey const basic::options::OptionKeys::dna::design::protein_scan

extern

repack_only

BooleanOptionKey const basic::options::OptionKeys::dna::design::repack_only

extern

Referenced by MainWindow::on_button_run_packer_clicked().

reversion_scan

BooleanOptionKey const basic::options::OptionKeys::dna::design::reversion_scan

extern

sparse_pdb_output

BooleanOptionKey const basic::options::OptionKeys::dna::design::sparse_pdb_output

extern

z_cutoff

RealOptionKey const basic::options::OptionKeys::dna::design::z_cutoff

extern