RNA_ScoreMover Class Reference

Inheritance diagram for RNA_ScoreMover:

Public Member Functions
	RNA_ScoreMover (core::scoring::ScoreFunctionOP const &sfxn, core::pose::PoseOP const &native_pose, core::chemical::ResidueTypeSetCOP const &rsd_set)
void	apply (core::pose::Pose &pose) override
std::string	get_name () const override
MoverOP	clone () const override
MoverOP	fresh_instance () const override

Private Attributes
core::scoring::ScoreFunctionOP	sfxn_
core::pose::PoseOP	native_pose_
core::pose::full_model_info::FullModelInfoOP	my_model_
core::chemical::ResidueTypeSetCOP	rsd_set_
utility::vector1< pose::PoseOP >	other_poses_
core::energy_methods::RNA_ChemicalMappingEnergyOP	rna_chemical_mapping_energy_ = nullptr
core::io::rna::RNA_DataReaderOP	rna_data_reader_ = nullptr

Constructor & Destructor Documentation

RNA_ScoreMover()

RNA_ScoreMover::RNA_ScoreMover	(	core::scoring::ScoreFunctionOP const &	sfxn,
		core::pose::PoseOP const &	native_pose,
		core::chemical::ResidueTypeSetCOP const &	rsd_set
	)

References basic::options::OptionKeys::motifs::data_file, pyrosetta.distributed.io::get_score_function(), my_model_, kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, native_pose_, option, basic::options::OptionKeys::full_model::other_poses, full_model::other_poses(), other_poses_, rna_data_reader_, rsd_set_, sfxn_, and basic::options::OptionKeys::inout::dbms::user.

Member Function Documentation

apply()

void RNA_ScoreMover::apply ( core::pose::Pose &  pose )

override

References calc_dihedral_rms(), basic::options::OptionKeys::chemical::chemical, data, do_color_by_score(), in::file::fasta(), get_rmsd(), create_a3b_hbs::ii, score::just_calc_rmsd(), my_model_, kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, native_pose_, option, other_poses_, basic::options::OptionKeys::flexPepDocking::params_file, create_a3b_hbs::pdb_info, beta_nonlocal::pose, utility::replace_in(), predPRE::resnum, average_rmsds::rmsd, basic::options::OptionKeys::abinitio::rmsd_residues, rna_chemical_mapping_energy_, rna_data_reader_, basic::options::OptionKeys::frags::scoring::scoring, pyrosetta.bindings.warnings::setPoseExtraScore(), basic::options::OptionKeys::in::file::silent, in::file::silent(), out::file::silent(), basic::options::OptionKeys::stepwise::superimpose_over_all, tag, tag_from_pose(), TR, basic::options::OptionKeys::inout::dbms::user, and utility_exit_with_message.

Referenced by pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase::__setitem__(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase::_maybe_delete_keys_from_sm_data(), and pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask::execute().

clone()

MoverOP RNA_ScoreMover::clone ( ) const

inlineoverride

fresh_instance()

MoverOP RNA_ScoreMover::fresh_instance ( ) const

inlineoverride

get_name()

std::string RNA_ScoreMover::get_name ( ) const

inlineoverride

Member Data Documentation

my_model_

core::pose::full_model_info::FullModelInfoOP RNA_ScoreMover::my_model_

private

Referenced by apply(), and RNA_ScoreMover().

native_pose_

core::pose::PoseOP RNA_ScoreMover::native_pose_

private

Referenced by apply(), and RNA_ScoreMover().

other_poses_

utility::vector1< pose::PoseOP > RNA_ScoreMover::other_poses_

private

Referenced by apply(), and RNA_ScoreMover().

rna_chemical_mapping_energy_

core::energy_methods::RNA_ChemicalMappingEnergyOP RNA_ScoreMover::rna_chemical_mapping_energy_ = nullptr

private

Referenced by apply().

rna_data_reader_

core::io::rna::RNA_DataReaderOP RNA_ScoreMover::rna_data_reader_ = nullptr

private

Referenced by apply(), and RNA_ScoreMover().

rsd_set_

core::chemical::ResidueTypeSetCOP RNA_ScoreMover::rsd_set_

private

Referenced by RNA_ScoreMover().

sfxn_

core::scoring::ScoreFunctionOP RNA_ScoreMover::sfxn_

private

Referenced by RNA_ScoreMover().

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The documentation for this class was generated from the following file:

• src/apps/public/rna/util/rna_score.cc