basic::options::OptionKeys::stepwise::monte_carlo Namespace Reference

Namespaces
	csa

Variables
BooleanOptionKey const	monte_carlo
BooleanOptionKey const	verbose_scores
BooleanOptionKey const	skip_deletions
BooleanOptionKey const	allow_internal_hinge_moves
BooleanOptionKey const	allow_internal_local_moves
BooleanOptionKey const	allow_skip_bulge
RealOptionKey const	skip_bulge_frequency
RealOptionKey const	from_scratch_frequency
BooleanOptionKey const	allow_split_off
IntegerOptionKey const	cycles
RealOptionKey const	temperature
RealOptionKey const	add_proposal_density_factor
RealOptionKey const	add_delete_frequency
RealOptionKey const	docking_frequency
RealOptionKey const	submotif_frequency
RealOptionKey const	intermolecular_frequency
RealOptionKey const	minimize_single_res_frequency
BooleanOptionKey const	allow_variable_bond_geometry
RealOptionKey const	switch_focus_frequency
RealOptionKey const	just_min_after_mutation_frequency
BooleanOptionKey const	local_redock_only
BooleanOptionKey const	make_movie
BooleanOptionKey const	recover_low
BooleanOptionKey const	use_precomputed_library
BooleanOptionKey const	allow_submotif_split
BooleanOptionKey const	force_submotif_without_intervening_bulge
BooleanOptionKey const	use_first_jump_for_submotif
StringVectorOptionKey const	exclude_submotifs
RealOptionKey const	vary_loop_length_frequency
BooleanOptionKey const	designing_with_noncanonicals
IntegerOptionKey const	checkpointing_frequency
BooleanOptionKey const	continue_until_none_missing
FileVectorOptionKey const	full_model_constraints

Variable Documentation

add_delete_frequency

RealOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::add_delete_frequency

extern

add_proposal_density_factor

RealOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::add_proposal_density_factor

extern

allow_internal_hinge_moves

BooleanOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::allow_internal_hinge_moves

extern

Referenced by main().

allow_internal_local_moves

BooleanOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::allow_internal_local_moves

extern

Referenced by main().

allow_skip_bulge

BooleanOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::allow_skip_bulge

extern

Referenced by main().

allow_split_off

BooleanOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::allow_split_off

extern

allow_submotif_split

BooleanOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::allow_submotif_split

extern

allow_variable_bond_geometry

BooleanOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::allow_variable_bond_geometry

extern

Referenced by main().

checkpointing_frequency

IntegerOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::checkpointing_frequency

extern

continue_until_none_missing

BooleanOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::continue_until_none_missing

extern

cycles

IntegerOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::cycles

extern

Referenced by main().

designing_with_noncanonicals

BooleanOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::designing_with_noncanonicals

extern

docking_frequency

RealOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::docking_frequency

extern

exclude_submotifs

StringVectorOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::exclude_submotifs

extern

force_submotif_without_intervening_bulge

BooleanOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::force_submotif_without_intervening_bulge

extern

from_scratch_frequency

RealOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::from_scratch_frequency

extern

full_model_constraints

FileVectorOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::full_model_constraints

extern

intermolecular_frequency

RealOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::intermolecular_frequency

extern

just_min_after_mutation_frequency

RealOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::just_min_after_mutation_frequency

extern

Referenced by main().

local_redock_only

BooleanOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::local_redock_only

extern

make_movie

BooleanOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::make_movie

extern

Referenced by main().

minimize_single_res_frequency

RealOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::minimize_single_res_frequency

extern

Referenced by main().

monte_carlo

BooleanOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::monte_carlo

extern

recover_low

BooleanOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::recover_low

extern

skip_bulge_frequency

RealOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::skip_bulge_frequency

extern

skip_deletions

BooleanOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::skip_deletions

extern

Referenced by main().

submotif_frequency

RealOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::submotif_frequency

extern

Referenced by main().

switch_focus_frequency

RealOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::switch_focus_frequency

extern

Referenced by main().

temperature

RealOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::temperature

extern

use_first_jump_for_submotif

BooleanOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::use_first_jump_for_submotif

extern

use_precomputed_library

BooleanOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::use_precomputed_library

extern

vary_loop_length_frequency

RealOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::vary_loop_length_frequency

extern

verbose_scores

BooleanOptionKey const basic::options::OptionKeys::stepwise::monte_carlo::verbose_scores

extern

Referenced by main().