basic::options::OptionKeys::carbohydrates::clash_check Namespace Reference

Variables
BooleanOptionKey const	clash_check
StringVectorOptionKey const	glycan_branches
StringVectorOptionKey const	check_chains
RealOptionKey const	soft_clash
RealOptionKey const	cb_clash_distance
BooleanOptionKey const	ignore_hydrogens
BooleanOptionKey const	ignore_full_res_output
BooleanOptionKey const	output_per_glycan_data

Variable Documentation

cb_clash_distance

RealOptionKey const basic::options::OptionKeys::carbohydrates::clash_check::cb_clash_distance

extern

check_chains

StringVectorOptionKey const basic::options::OptionKeys::carbohydrates::clash_check::check_chains

extern

Referenced by GlycanClashCheckMover::init(), and register_options().

clash_check

BooleanOptionKey const basic::options::OptionKeys::carbohydrates::clash_check::clash_check

extern

Referenced by MatchSet::c2_clash_check(), MatchSet::clash_check(), MatchSet::clash_check_inv(), MatchSet::cross(), MatchSet::cross_homodimer(), and MatchSet::selfcross_c2().

glycan_branches

StringVectorOptionKey const basic::options::OptionKeys::carbohydrates::clash_check::glycan_branches

extern

Referenced by GlycanClashCheckMover::init(), and register_options().

ignore_full_res_output

BooleanOptionKey const basic::options::OptionKeys::carbohydrates::clash_check::ignore_full_res_output

extern

Referenced by GlycanClashCheckMover::init().

ignore_hydrogens

BooleanOptionKey const basic::options::OptionKeys::carbohydrates::clash_check::ignore_hydrogens

extern

Referenced by GlycanClashCheckMover::init().

output_per_glycan_data

BooleanOptionKey const basic::options::OptionKeys::carbohydrates::clash_check::output_per_glycan_data

extern

Referenced by GlycanClashCheckMover::init().

soft_clash

RealOptionKey const basic::options::OptionKeys::carbohydrates::clash_check::soft_clash

extern

Referenced by GlycanClashCheckMover::calculate_atom_clashes(), GlycanClashCheckMover::init(), and GlycanClashCheckMover::is_clashing().