predictedCstFilter.cc File Reference

#include <core/types.hh>
#include <devel/init.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/util.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/pose/Pose.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/annotated_sequence.hh>
#include <basic/options/option.hh>
#include <basic/options/util.hh>
#include <basic/options/after_opts.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/cm.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <core/sequence/Sequence.hh>
#include <core/id/SequenceMapping.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/ConstraintIO.hh>
#include <core/scoring/constraints/util.hh>
#include <basic/basic.hh>
#include <basic/Tracer.hh>
#include <utility/vector1.hh>
#include <fstream>
#include <iostream>
#include <string>
#include <apps/pilot/brunette/tj_util.hh>

Functions
int	main (int argc, char *argv[])

Variables
static basic::Tracer	tr ("brunette.predictedCstFilter")

Detailed Description

Author

TJ Brunette tjbru.nosp@m.nett.nosp@m.e@gma.nosp@m.il.e.nosp@m.du

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, basic::options::OptionKeys::in::file::burial, calculate_surface_exposure(), utility::io::oc::cout, test.T009_Exceptions::e, basic::options::OptionKeys::in::file::fasta, generate_partial_threads(), basic::init(), input_alignmentsMapped(), basic::options::option, poses_from_cmd_line(), basic::options::OptionKeys::relax::sequence, and basic::options::OptionKeys::in::file::template_pdb.

Variable Documentation

tr

basic::Tracer tr("brunette.predictedCstFilter") ( "brunette.predictedCstFilter"  )

static