basic::options::OptionKeys::jumps Namespace Reference

Variables
BooleanOptionKey const	jumps
BooleanOptionKey const	evaluate
FileOptionKey const	extra_frags_for_ss
BooleanOptionKey const	fix_chainbreak
FileOptionKey const	fix_jumps
FileOptionKey const	jump_lib
FileOptionKey const	loop_definition_from_file
BooleanOptionKey const	no_chainbreak_in_relax
FileOptionKey const	pairing_file
IntegerVectorOptionKey const	random_sheets
FileOptionKey const	residue_pair_jump_file
IntegerVectorOptionKey const	sheets
FileOptionKey const	topology_file
BooleanOptionKey const	bb_moves
BooleanOptionKey const	no_wobble
BooleanOptionKey const	no_shear
BooleanOptionKey const	no_sample_ss_jumps
IntegerOptionKey const	invrate_jump_move
RealOptionKey const	chainbreak_weight_stage1
RealOptionKey const	chainbreak_weight_stage2
RealOptionKey const	chainbreak_weight_stage3
RealOptionKey const	chainbreak_weight_stage4
BooleanOptionKey const	ramp_chainbreaks
RealOptionKey const	increase_chainbreak
BooleanOptionKey const	overlap_chainbreak
RealOptionKey const	sep_switch_accelerate
BooleanOptionKey const	dump_frags
IntegerOptionKey const	njumps
IntegerOptionKey const	max_strand_gap_allowed
RealOptionKey const	contact_score
BooleanOptionKey const	filter_templates

Variable Documentation

bb_moves

BooleanOptionKey const basic::options::OptionKeys::jumps::bb_moves

extern

chainbreak_weight_stage1

RealOptionKey const basic::options::OptionKeys::jumps::chainbreak_weight_stage1

extern

chainbreak_weight_stage2

RealOptionKey const basic::options::OptionKeys::jumps::chainbreak_weight_stage2

extern

chainbreak_weight_stage3

RealOptionKey const basic::options::OptionKeys::jumps::chainbreak_weight_stage3

extern

chainbreak_weight_stage4

RealOptionKey const basic::options::OptionKeys::jumps::chainbreak_weight_stage4

extern

contact_score

RealOptionKey const basic::options::OptionKeys::jumps::contact_score

extern

Referenced by capri_t033_trim_dock_test(), and main().

dump_frags

BooleanOptionKey const basic::options::OptionKeys::jumps::dump_frags

extern

evaluate

BooleanOptionKey const basic::options::OptionKeys::jumps::evaluate

extern

Referenced by numeric::nls::lmmin().

extra_frags_for_ss

FileOptionKey const basic::options::OptionKeys::jumps::extra_frags_for_ss

extern

filter_templates

BooleanOptionKey const basic::options::OptionKeys::jumps::filter_templates

extern

fix_chainbreak

BooleanOptionKey const basic::options::OptionKeys::jumps::fix_chainbreak

extern

fix_jumps

FileOptionKey const basic::options::OptionKeys::jumps::fix_jumps

extern

increase_chainbreak

RealOptionKey const basic::options::OptionKeys::jumps::increase_chainbreak

extern

invrate_jump_move

IntegerOptionKey const basic::options::OptionKeys::jumps::invrate_jump_move

extern

jump_lib

FileOptionKey const basic::options::OptionKeys::jumps::jump_lib

extern

jumps

BooleanOptionKey const basic::options::OptionKeys::jumps::jumps

extern

loop_definition_from_file

FileOptionKey const basic::options::OptionKeys::jumps::loop_definition_from_file

extern

max_strand_gap_allowed

IntegerOptionKey const basic::options::OptionKeys::jumps::max_strand_gap_allowed

extern

Referenced by main().

njumps

IntegerOptionKey const basic::options::OptionKeys::jumps::njumps

extern

Referenced by main().

no_chainbreak_in_relax

BooleanOptionKey const basic::options::OptionKeys::jumps::no_chainbreak_in_relax

extern

Referenced by protocols::abinitio::JumpSpecificAbrelax::generate_scorefxn().

no_sample_ss_jumps

BooleanOptionKey const basic::options::OptionKeys::jumps::no_sample_ss_jumps

extern

no_shear

BooleanOptionKey const basic::options::OptionKeys::jumps::no_shear

extern

no_wobble

BooleanOptionKey const basic::options::OptionKeys::jumps::no_wobble

extern

overlap_chainbreak

BooleanOptionKey const basic::options::OptionKeys::jumps::overlap_chainbreak

extern

Referenced by protocols::abinitio::JumpSpecificAbrelax::do_distributed_rerun(), protocols::abinitio::JumpSpecificAbrelax::do_rerun(), protocols::abinitio::JumpSpecificAbrelax::generate_scorefxn(), and main().

pairing_file

FileOptionKey const basic::options::OptionKeys::jumps::pairing_file

extern

ramp_chainbreaks

BooleanOptionKey const basic::options::OptionKeys::jumps::ramp_chainbreaks

extern

random_sheets

IntegerVectorOptionKey const basic::options::OptionKeys::jumps::random_sheets

extern

residue_pair_jump_file

FileOptionKey const basic::options::OptionKeys::jumps::residue_pair_jump_file

extern

sep_switch_accelerate

RealOptionKey const basic::options::OptionKeys::jumps::sep_switch_accelerate

extern

sheets

IntegerVectorOptionKey const basic::options::OptionKeys::jumps::sheets

extern

Referenced by get_sheets(), main(), protocols::abinitio::JumpSpecificAbrelax::setup_jumps(), and DomainDescription::sheet_match().

topology_file

FileOptionKey const basic::options::OptionKeys::jumps::topology_file

extern