pyrosetta.bindings.pose.PoseScoreAccessor Class Reference

Inheritance diagram for pyrosetta.bindings.pose.PoseScoreAccessor:

Public Member Functions
def	__init__ (self, pose)
def	extra (self)
def	energies (self)
def	all (self)
def	__len__ (self)
def	__iter__ (self)
def	__getitem__ (self, key)
def	__setitem__ (self, key, value)
def	__delitem__ (self, key)
def	clear (self)
def	__str__ (self)

Public Attributes
	pose

Private Member Functions
def	_repr_pretty_ (self, p, cycle)

Static Private Attributes
tuple	__slots__ = ("pose",)
dictionary	_reserved = {k for k in ScoreType.__dict__.keys() if not k.startswith("_")}

Detailed Description

Accessor wrapper for pose energies and extra scores.

Constructor & Destructor Documentation

__init__()

def pyrosetta.bindings.pose.PoseScoreAccessor.__init__	(		self,
			pose
	)

Referenced by pyrosetta.distributed.tasks.taskbase.TaskBase.__setstate__().

Member Function Documentation

__delitem__()

def pyrosetta.bindings.pose.PoseScoreAccessor.__delitem__	(		self,
			key
	)

References pyrosetta.bindings.pose.PoseScoreAccessor._reserved, pyrosetta.bindings.scores.base.PoseCacheAccessorBase._reserved(), pyrosetta.tests.distributed.test_dask.format, PDB_IOBenchmark.pose, ScoreBenchmark.pose, ShearMoverBenchmark.pose, SmallMoverBenchmark.pose, SamplingManager.pose, apps::pilot::KicSandbox.pose, PoseAndData.pose, PoseWrap.pose, MatchBase.pose, MatchLig.pose, SlideTask.pose(), HIT.pose, WorkDat.pose, pyrosetta.bindings.pose.PoseResidueAccessor.pose, pyrosetta.bindings.pose.PoseResidueLabelAccessor.pose, pyrosetta.bindings.pose.PoseScoreAccessor.pose, pyrosetta.bindings.scores.base.PoseCacheAccessorBase.pose, ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget.pose(), pyrosetta.distributed.packed_pose.core.PackedPose.pose(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.pose, test.T010_LoadPDB.LoadPDBTest.pose, and test.T300_PyJobDistributor.TestPyJobDistributor.pose.

Referenced by pyrosetta.bindings.pose.PoseScoreAccessor.__setitem__().

__getitem__()

def pyrosetta.bindings.pose.PoseScoreAccessor.__getitem__	(		self,
			key
	)

References pyrosetta.bindings.pose.PoseScoreAccessor.all(), pyrosetta.bindings.scores.core.PoseCacheAccessor.all(), pyrosetta.bindings.scores.energies.EnergiesAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraFloatScoresDataAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraStringScoresDataAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueProbabilitiesDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.all(), and ui::task::Node.all.

__iter__()

def pyrosetta.bindings.pose.PoseScoreAccessor.__iter__

(

self

)

References pyrosetta.bindings.pose.PoseScoreAccessor.all(), pyrosetta.bindings.scores.core.PoseCacheAccessor.all(), pyrosetta.bindings.scores.energies.EnergiesAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraFloatScoresDataAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraStringScoresDataAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueProbabilitiesDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.all(), and ui::task::Node.all.

__len__()

def pyrosetta.bindings.pose.PoseScoreAccessor.__len__

(

self

)

References pyrosetta.bindings.pose.PoseScoreAccessor.all(), pyrosetta.bindings.scores.core.PoseCacheAccessor.all(), pyrosetta.bindings.scores.energies.EnergiesAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraFloatScoresDataAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraStringScoresDataAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueProbabilitiesDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.all(), ui::task::Node.all, and ObjexxFCL.len().

__setitem__()

def pyrosetta.bindings.pose.PoseScoreAccessor.__setitem__	(		self,
			key,
			value
	)

References pyrosetta.bindings.pose.PoseScoreAccessor.__delitem__(), pyrosetta.bindings.scores.core.PoseCacheAccessor.__delitem__(), pyrosetta.bindings.scores.energies.EnergiesAccessor.__delitem__(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase.__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase.__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor.__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor.__delitem__(), pyrosetta.io.silent_file_map.SilentFileMap.__delitem__(), pyrosetta.bindings.pose.PoseScoreAccessor._reserved, pyrosetta.bindings.scores.base.PoseCacheAccessorBase._reserved(), PDB_IOBenchmark.pose, ScoreBenchmark.pose, ShearMoverBenchmark.pose, SmallMoverBenchmark.pose, SamplingManager.pose, apps::pilot::KicSandbox.pose, PoseAndData.pose, PoseWrap.pose, MatchBase.pose, MatchLig.pose, SlideTask.pose(), HIT.pose, WorkDat.pose, pyrosetta.bindings.pose.PoseResidueAccessor.pose, pyrosetta.bindings.pose.PoseResidueLabelAccessor.pose, pyrosetta.bindings.pose.PoseScoreAccessor.pose, pyrosetta.bindings.scores.base.PoseCacheAccessorBase.pose, ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget.pose(), pyrosetta.distributed.packed_pose.core.PackedPose.pose(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.pose, test.T010_LoadPDB.LoadPDBTest.pose, test.T300_PyJobDistributor.TestPyJobDistributor.pose, and pyrosetta.bindings.warnings.setPoseExtraScore().

__str__()

def pyrosetta.bindings.pose.PoseScoreAccessor.__str__

(

self

)

References str().

_repr_pretty_()

def pyrosetta.bindings.pose.PoseScoreAccessor._repr_pretty_ (   self,   p,   cycle  )

private

IPython-display representation.

all()

def pyrosetta.bindings.pose.PoseScoreAccessor.all

(

self

)

References pyrosetta.bindings.energies.active_total_energies(), pyrosetta.bindings.pose.PoseScoreAccessor.energies(), pyrosetta.tests.distributed.test_dask.format, basic::options::OptionKeys::in::file.list, PDB_IOBenchmark.pose, ScoreBenchmark.pose, ShearMoverBenchmark.pose, SmallMoverBenchmark.pose, SamplingManager.pose, apps::pilot::KicSandbox.pose, PoseAndData.pose, PoseWrap.pose, MatchBase.pose, MatchLig.pose, SlideTask.pose(), HIT.pose, WorkDat.pose, pyrosetta.bindings.pose.PoseResidueAccessor.pose, pyrosetta.bindings.pose.PoseResidueLabelAccessor.pose, pyrosetta.bindings.pose.PoseScoreAccessor.pose, pyrosetta.bindings.scores.base.PoseCacheAccessorBase.pose, ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget.pose(), pyrosetta.distributed.packed_pose.core.PackedPose.pose(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.pose, test.T010_LoadPDB.LoadPDBTest.pose, and test.T300_PyJobDistributor.TestPyJobDistributor.pose.

Referenced by pyrosetta.bindings.pose.PoseScoreAccessor.__getitem__(), pyrosetta.bindings.scores.core.PoseCacheAccessor.__getitem__(), pyrosetta.bindings.scores.energies.EnergiesAccessor.__getitem__(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase.__getitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase.__getitem__(), pyrosetta.bindings.pose.PoseScoreAccessor.__iter__(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase.__iter__(), pyrosetta.bindings.pose.PoseScoreAccessor.__len__(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase.__len__(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase.clear(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase.clear(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor.clear(), and pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor.clear().

clear()

def pyrosetta.bindings.pose.PoseScoreAccessor.clear

(

self

)

 Clear pose energies, extra scores, and SimpleMetric data

References pyrosetta.bindings.pose.PoseScoreAccessor.energies(), PDB_IOBenchmark.pose, ScoreBenchmark.pose, ShearMoverBenchmark.pose, SmallMoverBenchmark.pose, SamplingManager.pose, apps::pilot::KicSandbox.pose, PoseAndData.pose, PoseWrap.pose, MatchBase.pose, MatchLig.pose, SlideTask.pose(), HIT.pose, WorkDat.pose, pyrosetta.bindings.pose.PoseResidueAccessor.pose, pyrosetta.bindings.pose.PoseResidueLabelAccessor.pose, pyrosetta.bindings.pose.PoseScoreAccessor.pose, pyrosetta.bindings.scores.base.PoseCacheAccessorBase.pose, ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget.pose(), pyrosetta.distributed.packed_pose.core.PackedPose.pose(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.pose, test.T010_LoadPDB.LoadPDBTest.pose, and test.T300_PyJobDistributor.TestPyJobDistributor.pose.

Referenced by pyrosetta.bindings.pose.ResidueLabelAccessor.discard().

energies()

def pyrosetta.bindings.pose.PoseScoreAccessor.energies

(

self

)

References pyrosetta.bindings.energies.active_total_energies(), PDB_IOBenchmark.pose, ScoreBenchmark.pose, ShearMoverBenchmark.pose, SmallMoverBenchmark.pose, SamplingManager.pose, apps::pilot::KicSandbox.pose, PoseAndData.pose, PoseWrap.pose, MatchBase.pose, MatchLig.pose, SlideTask.pose(), HIT.pose, WorkDat.pose, pyrosetta.bindings.pose.PoseResidueAccessor.pose, pyrosetta.bindings.pose.PoseResidueLabelAccessor.pose, pyrosetta.bindings.pose.PoseScoreAccessor.pose, pyrosetta.bindings.scores.base.PoseCacheAccessorBase.pose, ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget.pose(), pyrosetta.distributed.packed_pose.core.PackedPose.pose(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.pose, test.T010_LoadPDB.LoadPDBTest.pose, and test.T300_PyJobDistributor.TestPyJobDistributor.pose.

Referenced by pyrosetta.bindings.pose.PoseScoreAccessor.all(), pyrosetta.bindings.scores.core.PoseCacheAccessor.all(), pyrosetta.bindings.scores.core.PoseCacheAccessor.all_scores(), and pyrosetta.bindings.pose.PoseScoreAccessor.clear().

extra()

def pyrosetta.bindings.pose.PoseScoreAccessor.extra

(

self

)

References pyrosetta.tests.distributed.test_dask.format, basic::options::OptionKeys::in::file.list, PDB_IOBenchmark.pose, ScoreBenchmark.pose, ShearMoverBenchmark.pose, SmallMoverBenchmark.pose, SamplingManager.pose, apps::pilot::KicSandbox.pose, PoseAndData.pose, PoseWrap.pose, MatchBase.pose, MatchLig.pose, SlideTask.pose(), HIT.pose, WorkDat.pose, pyrosetta.bindings.pose.PoseResidueAccessor.pose, pyrosetta.bindings.pose.PoseResidueLabelAccessor.pose, pyrosetta.bindings.pose.PoseScoreAccessor.pose, pyrosetta.bindings.scores.base.PoseCacheAccessorBase.pose, ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget.pose(), pyrosetta.distributed.packed_pose.core.PackedPose.pose(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.pose, test.T010_LoadPDB.LoadPDBTest.pose, and test.T300_PyJobDistributor.TestPyJobDistributor.pose.

Referenced by pyrosetta.bindings.scores.core.PoseCacheAccessor.all(), and pyrosetta.bindings.scores.core.PoseCacheAccessor.all_scores().

Member Data Documentation

__slots__

tuple pyrosetta.bindings.pose.PoseScoreAccessor.__slots__ = ("pose",)

staticprivate

Referenced by pyrosetta.distributed.cluster.io.IO._get_instance_and_metadata().

_reserved

dictionary pyrosetta.bindings.pose.PoseScoreAccessor._reserved = {k for k in ScoreType.__dict__.keys() if not k.startswith("_")}

staticprivate

Referenced by pyrosetta.bindings.pose.PoseScoreAccessor.__delitem__(), pyrosetta.bindings.pose.PoseScoreAccessor.__setitem__(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._validate_del(), and pyrosetta.bindings.scores.base.PoseCacheAccessorBase._validate_set().

pose

pyrosetta.bindings.pose.PoseScoreAccessor.pose

Referenced by pyrosetta.bindings.pose.PoseScoreAccessor.__delitem__(), pyrosetta.bindings.scores.core.PoseCacheAccessor.__delitem__(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase.__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase.__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor.__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor.__delitem__(), pyrosetta.bindings.pose.PoseResidueAccessor.__getitem__(), pyrosetta.bindings.pose.PoseResidueLabelAccessor.__getitem__(), pyrosetta.bindings.pose.PoseResidueAccessor.__iadd__(), pyrosetta.bindings.pose.PoseResidueAccessor.__imul__(), pyrosetta.bindings.pose.PoseResidueAccessor.__iter__(), pyrosetta.bindings.pose.PoseResidueAccessor.__len__(), pyrosetta.bindings.pose.PoseResidueLabelAccessor.__len__(), pyrosetta.bindings.pose.PoseResidueLabelAccessor.__repr__(), pyrosetta.bindings.pose.PoseResidueAccessor.__reversed__(), pyrosetta.bindings.pose.PoseScoreAccessor.__setitem__(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase.__setitem__(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._get_sm_data_dict(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._has_reserved_custom_metric_keys(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._maybe_delete_keys_from_sm_data(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._maybe_delete_reserved_keys_from_sm_data(), pyrosetta.bindings.pose.PoseScoreAccessor.all(), pyrosetta.bindings.scores.energies.EnergiesAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraFloatScoresDataAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraStringScoresDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueProbabilitiesDataAccessor.all(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase.apply(), pyrosetta.bindings.pose.PoseScoreAccessor.clear(), pyrosetta.bindings.scores.core.PoseCacheAccessor.clear(), pyrosetta.bindings.scores.energies.EnergiesAccessor.clear(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase.clear(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor.clear(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.clear(), pyrosetta.distributed.packed_pose.core.PackedPose.clone(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.composite_real(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.composite_string(), pyrosetta.distributed.packed_pose.core.PackedPose.empty(), pyrosetta.bindings.pose.PoseScoreAccessor.energies(), pyrosetta.bindings.scores.core.PoseCacheAccessor.energies(), pyrosetta.bindings.pose.PoseScoreAccessor.extra(), pyrosetta.bindings.scores.core.PoseCacheAccessor.extra(), pyrosetta.bindings.scores.core.PoseCacheAccessor.metrics(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.per_residue_probabilities(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.per_residue_real(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.per_residue_string(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor.real(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.real(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor.string(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.string(), test.T300_PyJobDistributor.TestPyJobDistributor.test_jd(), test.T300_PyJobDistributor.TestPyJobDistributor.test_jd_at(), test.T300_PyJobDistributor.TestPyJobDistributor.test_jd_serializable_scores(), test.T300_PyJobDistributor.TestPyJobDistributor.test_jd_unserializable_scores(), test.T010_LoadPDB.LoadPDBTest.test_pdbstring_io(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.test_pose_cache(), test.T010_LoadPDB.LoadPDBTest.test_roundtrip_file(), test.T010_LoadPDB.LoadPDBTest.test_roundtrip_pdb(), test.T010_LoadPDB.LoadPDBTest.test_roundtrip_scored_pdb(), and pyrosetta.distributed.packed_pose.core.PackedPose.update_scores().

---

The documentation for this class was generated from the following file:

• src/python/PyRosetta/src/pyrosetta/bindings/pose.py