pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed Class Reference

Inheritance diagram for pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed:

Public Member Functions
def	test_score_smoke_test (self)
def	test_update_score (self)
def	test_silent_io (self)
def	test_clone (self)
def	roundtrip (self, func, ext, input_packed_pose, workdir, scorefxn)
def	test_packed_pose_io (self)
def	test_poses_from_sequences_io (self)
def	test_multimodel_pdb_io (self)
def	test_poses_from_files_io (self)

Static Public Attributes
string	min_rs

Member Function Documentation

roundtrip()

def pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed.roundtrip	(		self,
			func,
			ext,
			input_packed_pose,
			workdir,
			scorefxn
	)

Used in `test_packed_pose_io` testing framework.

References natoms(), range, and basic::options::OptionKeys::in::file.xyz.

Referenced by pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed.test_packed_pose_io().

test_clone()

def pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed.test_clone

(

self

)

test_multimodel_pdb_io()

def pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed.test_multimodel_pdb_io

(

self

)

test_packed_pose_io()

def pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed.test_packed_pose_io

(

self

)

References pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed.roundtrip(), and oop_conformations.scorefxn.

test_poses_from_files_io()

def pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed.test_poses_from_files_io

(

self

)

References basic::options::OptionKeys::stepwise.enumerate, join(), range, and basic::options::OptionKeys::in::file.zip.

test_poses_from_sequences_io()

def pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed.test_poses_from_sequences_io

(

self

)

References basic::options::OptionKeys::in::file.list, range, and basic::options::OptionKeys::in::file.zip.

test_score_smoke_test()

def pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed.test_score_smoke_test

(

self

)

RosettaScripts 'null' tasks just score with default score function.

A high-level smoke test of the distributed namespace. Inits a
packed-pose object via a call through the io layer, passes this through
the RosettaScripts layer, then through the scoring layers. Covers pose
serializiation/deserialization, score value extraction and rosetta
scripts parser access.

Which is to say, turn on the power and look for magic smoke.

References pyrosetta.distributed._normflags(), pyrosetta.distributed.init(), and pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed.min_rs.

test_silent_io()

def pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed.test_silent_io

(

self

)

References ObjexxFCL.len(), and range.

test_update_score()

def pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed.test_update_score

(

self

)

PackedPose.update_score returns an updated copy.

PackedPose.update_score performs an copy-update of the pack, not an
inplace modification. New score values are applied from kwargs and args,
with kwargs and later-arg masking duplicate values.

Member Data Documentation

min_rs

string pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed.min_rs

static

Initial value:

=  """
        <ROSETTASCRIPTS>
            <SCOREFXNS>
            </SCOREFXNS>
 
            <RESIDUE_SELECTORS>
            </RESIDUE_SELECTORS>
 
            <TASKOPERATIONS>
            </TASKOPERATIONS>
 
            <FILTERS>
            </FILTERS>
 
            <MOVERS>
            </MOVERS>
 
            <PROTOCOLS>
            </PROTOCOLS>
 
            <OUTPUT />
        </ROSETTASCRIPTS>
    """

Referenced by pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed.test_score_smoke_test().

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The documentation for this class was generated from the following file:

• src/python/PyRosetta/src/pyrosetta/tests/distributed/test_smoke.py