basic::options::OptionKeys::coupled_moves Namespace Reference

Variables
BooleanOptionKey const	coupled_moves
IntegerOptionKey const	ntrials
IntegerOptionKey const	number_ligands
RealOptionKey const	mc_kt
RealOptionKey const	boltzmann_kt
RealOptionKey const	mm_bend_weight
BooleanOptionKey const	trajectory
BooleanOptionKey const	trajectory_gz
IntegerOptionKey const	trajectory_stride
StringOptionKey const	trajectory_file
StringOptionKey const	output_fasta
StringOptionKey const	output_stats
BooleanOptionKey const	ligand_mode
BooleanOptionKey const	initial_repack
BooleanOptionKey const	min_pack
BooleanOptionKey const	save_sequences
BooleanOptionKey const	save_structures
RealOptionKey const	ligand_prob
BooleanOptionKey const	fix_backbone
BooleanOptionKey const	uniform_backrub
BooleanOptionKey const	bias_sampling
BooleanOptionKey const	bump_check
RealOptionKey const	ligand_weight
StringOptionKey const	output_prefix
RealOptionKey const	walking_perturber_magnitude
RealOptionKey const	kic_loop_size
StringOptionKey const	kic_perturber
StringOptionKey const	backbone_mover
BooleanOptionKey const	repack_neighborhood
BooleanOptionKey const	exclude_nonclashing_positions

Variable Documentation

backbone_mover

StringOptionKey const basic::options::OptionKeys::coupled_moves::backbone_mover

extern

Referenced by UBQ_E2Mover::apply(), UBQ_GTPase_disulfide_Mover::apply(), NativeEnsemble::apply(), and my_main().

bias_sampling

BooleanOptionKey const basic::options::OptionKeys::coupled_moves::bias_sampling

extern

boltzmann_kt

RealOptionKey const basic::options::OptionKeys::coupled_moves::boltzmann_kt

extern

bump_check

BooleanOptionKey const basic::options::OptionKeys::coupled_moves::bump_check

extern

coupled_moves

BooleanOptionKey const basic::options::OptionKeys::coupled_moves::coupled_moves

extern

Referenced by my_main().

exclude_nonclashing_positions

BooleanOptionKey const basic::options::OptionKeys::coupled_moves::exclude_nonclashing_positions

extern

fix_backbone

BooleanOptionKey const basic::options::OptionKeys::coupled_moves::fix_backbone

extern

initial_repack

BooleanOptionKey const basic::options::OptionKeys::coupled_moves::initial_repack

extern

Referenced by minimize_with_constraints().

kic_loop_size

RealOptionKey const basic::options::OptionKeys::coupled_moves::kic_loop_size

extern

Referenced by my_main().

kic_perturber

StringOptionKey const basic::options::OptionKeys::coupled_moves::kic_perturber

extern

Referenced by my_main().

ligand_mode

BooleanOptionKey const basic::options::OptionKeys::coupled_moves::ligand_mode

extern

ligand_prob

RealOptionKey const basic::options::OptionKeys::coupled_moves::ligand_prob

extern

ligand_weight

RealOptionKey const basic::options::OptionKeys::coupled_moves::ligand_weight

extern

mc_kt

RealOptionKey const basic::options::OptionKeys::coupled_moves::mc_kt

extern

min_pack

BooleanOptionKey const basic::options::OptionKeys::coupled_moves::min_pack

extern

mm_bend_weight

RealOptionKey const basic::options::OptionKeys::coupled_moves::mm_bend_weight

extern

ntrials

IntegerOptionKey const basic::options::OptionKeys::coupled_moves::ntrials

extern

Referenced by my_main().

number_ligands

IntegerOptionKey const basic::options::OptionKeys::coupled_moves::number_ligands

extern

output_fasta

StringOptionKey const basic::options::OptionKeys::coupled_moves::output_fasta

extern

output_prefix

StringOptionKey const basic::options::OptionKeys::coupled_moves::output_prefix

extern

Referenced by main(), MC_run(), and processRegions().

output_stats

StringOptionKey const basic::options::OptionKeys::coupled_moves::output_stats

extern

repack_neighborhood

BooleanOptionKey const basic::options::OptionKeys::coupled_moves::repack_neighborhood

extern

Referenced by my_main().

save_sequences

BooleanOptionKey const basic::options::OptionKeys::coupled_moves::save_sequences

extern

save_structures

BooleanOptionKey const basic::options::OptionKeys::coupled_moves::save_structures

extern

trajectory

BooleanOptionKey const basic::options::OptionKeys::coupled_moves::trajectory

extern

trajectory_file

StringOptionKey const basic::options::OptionKeys::coupled_moves::trajectory_file

extern

trajectory_gz

BooleanOptionKey const basic::options::OptionKeys::coupled_moves::trajectory_gz

extern

trajectory_stride

IntegerOptionKey const basic::options::OptionKeys::coupled_moves::trajectory_stride

extern

uniform_backrub

BooleanOptionKey const basic::options::OptionKeys::coupled_moves::uniform_backrub

extern

walking_perturber_magnitude

RealOptionKey const basic::options::OptionKeys::coupled_moves::walking_perturber_magnitude

extern

Referenced by my_main().