filter_sequences.cc File Reference

#include <core/types.hh>
#include <devel/init.hh>
#include <basic/prof.hh>
#include <basic/Tracer.hh>
#include <core/chemical/AA.hh>
#include <basic/options/option.hh>
#include <core/sequence/util.hh>
#include <core/sequence/Sequence.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <core/sequence/NWAligner.hh>
#include <core/sequence/SWAligner.hh>
#include <core/sequence/ScoringScheme.hh>
#include <core/sequence/ScoringScheme.fwd.hh>
#include <core/sequence/MatrixScoringScheme.hh>
#include <core/sequence/SimpleScoringScheme.hh>
#include <utility/io/izstream.hh>
#include <utility/io/ozstream.hh>
#include <utility/vector1.hh>
#include <utility/file/FileName.hh>
#include <utility/file/file_sys_util.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/char.functions.hh>
#include <ObjexxFCL/string.functions.hh>
#include <numeric/random/random.hh>
#include <map>
#include <fstream>
#include <iostream>
#include <string>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <utility/excn/Exceptions.hh>

Functions
bool	is_locked (std::string const &fn)
int	main (int argc, char *argv[])

Detailed Description

Author

James Thompson

Function Documentation

is_locked()

bool is_locked

(

std::string const &

fn

)

References utility::io::oc::cout, utility::file::file_exists(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::fn, and erraser_single_res_analysis::out.

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, predPRE::chain, utility::io::oc::cout, test.T009_Exceptions::e, end, in::file::fasta(), basic::init(), test_terpenes::inner, is_locked(), subloop_histogram::iterator, option, erraser_single_res_analysis::out, basic::prof_show(), PROF_START, PROF_STOP, basic::SEQUENCE_COMPARISON, and challenge::ss.