basic::options::OptionKeys::sc Namespace Reference

Variables
basic::options::StringOptionKey const	molecule_1 ("sc:molecule_1")
basic::options::StringOptionKey const	molecule_2 ("sc:molecule_2")
basic::options::BooleanOptionKey const	verbose ("sc:verbose")
basic::options::BooleanOptionKey const	quick ("sc:quick")
basic::options::RealOptionKey const	density ("sc:density")
basic::options::RealOptionKey const	rp ("sc:rp")
basic::options::RealOptionKey const	sep ("sc:sec")
basic::options::RealOptionKey const	trim ("sc:trim")
basic::options::RealOptionKey const	weight ("sc:weight")

Variable Documentation

density

basic::options::RealOptionKey const basic::options::OptionKeys::sc::density("sc:density")

(

"sc:density"

)

Referenced by main().

molecule_1

basic::options::StringOptionKey const basic::options::OptionKeys::sc::molecule_1("sc:molecule_1")

(

"sc:molecule_1"

)

Referenced by main(), and process_pose().

molecule_2

basic::options::StringOptionKey const basic::options::OptionKeys::sc::molecule_2("sc:molecule_2")

(

"sc:molecule_2"

)

Referenced by main(), and process_pose().

quick

basic::options::BooleanOptionKey const basic::options::OptionKeys::sc::quick("sc:quick")

(

"sc:quick"

)

Referenced by build_next_nucleotide_test(), and main().

rp

basic::options::RealOptionKey const basic::options::OptionKeys::sc::rp("sc:rp")

(

"sc:rp"

)

Referenced by main(), and numeric::xyzMatrix< T >::rows().

sep

basic::options::RealOptionKey const basic::options::OptionKeys::sc::sep("sc:sec")

(

"sc:sec"

)

Referenced by join(), main(), detail::int_writer< OutputIt, Char, UInt >::on_num(), PairScore::print(), PairScore::printHeader(), test(), and basic::database::write_schema_to_database().

trim

basic::options::RealOptionKey const basic::options::OptionKeys::sc::trim("sc:trim")

(

"sc:trim"

)

Referenced by apps::pilot::frankdt::import_motifs(), main(), binder::Config::read(), and numeric::interpolation::spline_from_file().

verbose

basic::options::BooleanOptionKey const basic::options::OptionKeys::sc::verbose("sc:verbose")

(

"sc:verbose"

)

Referenced by align_pdbs_function(), Packing_energies::apply(), SSM_energies::apply(), calc_dihedral_rms(), decompose(), densityTools(), expand_all_and_check_if_forms_lattice(), fill_chainTORS_info(), full_length_rmsd_over_reside_list_general(), get_interface_score(), hermann_phase_two(), hermann_phase_two_minimize(), if(), is_new_cluster_center_rotamer(), is_new_cluster_center_xyz(), KIC_loop_close(), main(), pass_VDW_replusion_screen_fast(), pass_VDW_replusion_screen_slow(), process_pose(), FragMonteCarlo::run(), FragmentAssemblyMover::score(), and setup_rhiju_fold_tree().

weight

basic::options::RealOptionKey const basic::options::OptionKeys::sc::weight("sc:weight")

(

"sc:weight"

)

Referenced by numeric::random::WeightedSampler::add_weight(), apps::pilot::SampleSecondaryStructureAlignmentMover::apply(), MyScoreMover::apply(), FaSolReporter::apply(), HBondReporter::apply(), calc_scores(), calc_vm(), calculate_hASA_by_type_and_attractiveE(), numeric::random::WeightedReservoirSampler< T >::consider_sample(), copy_rotamerized_torsions(), do_color_by_score(), dump_clash_pdb(), dump_hbonds(), evaluate_score(), main(), make_etable(), print_energies(), read_RDC_file(), SameResidueTypeConstraint::score(), ScoreFragInfo::ScoreFragInfo(), numeric::random::WeightedSampler::set_weight(), show_residue_residue_clashes(), and numeric::random::WeightedSampler::update_cumulative_distribution().