basic::options::OptionKeys::mh::match Namespace Reference

Variables
BooleanOptionKey const	match
BooleanOptionKey const	interface_only
BooleanOptionKey const	ss
BooleanOptionKey const	ss1
BooleanOptionKey const	ss2
BooleanOptionKey const	aa
BooleanOptionKey const	aa1
BooleanOptionKey const	aa2

Variable Documentation

aa

BooleanOptionKey const basic::options::OptionKeys::mh::match::aa

extern

aa1

BooleanOptionKey const basic::options::OptionKeys::mh::match::aa1

extern

Referenced by compute_bb_motif_score(), compute_motif_score(), get_basepair_atoms(), get_gremlin_d_and_width(), MatchSet::init(), main(), MatchLig::MatchLig(), and myspace::DataClass::scan_Evalue_and_write().

aa2

BooleanOptionKey const basic::options::OptionKeys::mh::match::aa2

extern

Referenced by compute_bb_motif_score(), compute_motif_score(), get_basepair_atoms(), get_gremlin_d_and_width(), MatchSet::init(), main(), MatchLig::MatchLig(), and myspace::DataClass::scan_Evalue_and_write().

interface_only

BooleanOptionKey const basic::options::OptionKeys::mh::match::interface_only

extern

match

BooleanOptionKey const basic::options::OptionKeys::mh::match::match

extern

ss

BooleanOptionKey const basic::options::OptionKeys::mh::match::ss

extern

ss1

BooleanOptionKey const basic::options::OptionKeys::mh::match::ss1

extern

Referenced by RDF_Mover::apply(), attach_simple_abego_pools(), check_redundant(), compute_bb_motif_score(), compute_motif_score(), distance(), doit(), RDF_Mover::hist(), insert_stage_tag(), main(), and make_frag_set().

ss2

BooleanOptionKey const basic::options::OptionKeys::mh::match::ss2

extern

Referenced by RDF_Mover::apply(), attach_simple_abego_pools(), check_redundant(), compute_bb_motif_score(), compute_motif_score(), distance(), doit(), RDF_Mover::hist(), insert_stage_tag(), main(), and make_frag_set().