basic::options::OptionKeys::edensity Namespace Reference

Variables
BooleanOptionKey const	edensity
BooleanOptionKey const	debug
StringOptionKey const	mapfile
RealOptionKey const	mapreso
RealOptionKey const	grid_spacing
RealOptionKey const	centroid_density_mass
IntegerOptionKey const	sliding_window
BooleanOptionKey const	cryoem_scatterers
RealOptionKey const	force_apix
RealOptionKey const	fastdens_wt
RealVectorOptionKey const	fastdens_params
BooleanOptionKey const	legacy_fastdens_score
RealOptionKey const	sliding_window_wt
BooleanOptionKey const	score_sliding_window_context
RealOptionKey const	whole_structure_ca_wt
RealOptionKey const	whole_structure_allatom_wt
BooleanOptionKey const	debug_derivatives
StringOptionKey const	realign
StringOptionKey const	membrane_axis
RealOptionKey const	atom_mask
RealOptionKey const	atom_mask_min
RealOptionKey const	ca_mask
BooleanOptionKey const	score_symm_complex
RealOptionKey const	sc_scaling
IntegerOptionKey const	n_kbins
BooleanOptionKey const	unmask_bb
BooleanOptionKey const	render_density
BooleanOptionKey const	periodicity

Variable Documentation

atom_mask

RealOptionKey const basic::options::OptionKeys::edensity::atom_mask

extern

Referenced by get_radius(), run_tyr_his(), and sidechain_sasa().

atom_mask_min

RealOptionKey const basic::options::OptionKeys::edensity::atom_mask_min

extern

ca_mask

RealOptionKey const basic::options::OptionKeys::edensity::ca_mask

extern

centroid_density_mass

RealOptionKey const basic::options::OptionKeys::edensity::centroid_density_mass

extern

cryoem_scatterers

BooleanOptionKey const basic::options::OptionKeys::edensity::cryoem_scatterers

extern

debug

BooleanOptionKey const basic::options::OptionKeys::edensity::debug

extern

Referenced by DockFragmentsMover::cut_from_map().

debug_derivatives

BooleanOptionKey const basic::options::OptionKeys::edensity::debug_derivatives

extern

edensity

BooleanOptionKey const basic::options::OptionKeys::edensity::edensity

extern

fastdens_params

RealVectorOptionKey const basic::options::OptionKeys::edensity::fastdens_params

extern

fastdens_wt

RealOptionKey const basic::options::OptionKeys::edensity::fastdens_wt

extern

force_apix

RealOptionKey const basic::options::OptionKeys::edensity::force_apix

extern

grid_spacing

RealOptionKey const basic::options::OptionKeys::edensity::grid_spacing

extern

Referenced by main().

legacy_fastdens_score

BooleanOptionKey const basic::options::OptionKeys::edensity::legacy_fastdens_score

extern

mapfile

StringOptionKey const basic::options::OptionKeys::edensity::mapfile

extern

Referenced by CaToAllAtom::CaToAllAtom(), cen_fold(), RelaxJobQueen::complete_larval_job_maturation(), densityTools(), LoopBuild_main(), main(), my_main(), and PoseWrap::PoseWrap().

mapreso

RealOptionKey const basic::options::OptionKeys::edensity::mapreso

extern

Referenced by densityTools(), and main().

membrane_axis

StringOptionKey const basic::options::OptionKeys::edensity::membrane_axis

extern

n_kbins

IntegerOptionKey const basic::options::OptionKeys::edensity::n_kbins

extern

periodicity

BooleanOptionKey const basic::options::OptionKeys::edensity::periodicity

extern

realign

StringOptionKey const basic::options::OptionKeys::edensity::realign

extern

Referenced by numeric::model_quality::rmsfitca2(), ChallengeMover::sample(), and HBondedPairIterator::update_hb().

render_density

BooleanOptionKey const basic::options::OptionKeys::edensity::render_density

extern

sc_scaling

RealOptionKey const basic::options::OptionKeys::edensity::sc_scaling

extern

score_sliding_window_context

BooleanOptionKey const basic::options::OptionKeys::edensity::score_sliding_window_context

extern

score_symm_complex

BooleanOptionKey const basic::options::OptionKeys::edensity::score_symm_complex

extern

sliding_window

IntegerOptionKey const basic::options::OptionKeys::edensity::sliding_window

extern

sliding_window_wt

RealOptionKey const basic::options::OptionKeys::edensity::sliding_window_wt

extern

unmask_bb

BooleanOptionKey const basic::options::OptionKeys::edensity::unmask_bb

extern

whole_structure_allatom_wt

RealOptionKey const basic::options::OptionKeys::edensity::whole_structure_allatom_wt

extern

whole_structure_ca_wt

RealOptionKey const basic::options::OptionKeys::edensity::whole_structure_ca_wt

extern