basic::options::OptionKeys::out Namespace Reference

Namespaces
	file
	path

Variables
BooleanOptionKey const	out
BooleanOptionKey const	overwrite
IntegerOptionKey const	nstruct
IntegerOptionKey const	shuffle_nstruct
StringOptionKey const	prefix
StringOptionKey const	suffix
BooleanOptionKey const	mover_controlled_output_name
BooleanOptionKey const	no_nstruct_label
BooleanOptionKey const	pdb_gz
BooleanOptionKey const	pdb
BooleanOptionKey const	silent_gz
BooleanOptionKey const	membrane_pdb
RealOptionKey const	membrane_pdb_thickness
BooleanOptionKey const	mmCIF
BooleanOptionKey const	mmCIF_gz
BooleanOptionKey const	mmtf
BooleanOptionKey const	mmtf_gz
BooleanOptionKey const	use_database
IntegerOptionKey const	database_protocol_id
StringVectorOptionKey const	database_filter
IntegerVectorOptionKey const	resume_batch
BooleanOptionKey const	nooutput
BooleanOptionKey const	output
RealOptionKey const	scorecut
BooleanOptionKey const	show_accessed_options
BooleanOptionKey const	show_unused_options
FileOptionKey const	sf
StringVectorOptionKey const	mute
StringVectorOptionKey const	unmute
IntegerOptionKey const	level
StringVectorOptionKey const	levels
BooleanOptionKey const	no_color
BooleanOptionKey const	chname
BooleanOptionKey const	chtimestamp
BooleanOptionKey const	dry_run
StringOptionKey const	mpi_tracer_to_file
IntegerOptionKey const	std_IO_exit_error_code
StringOptionKey const	user_tag
StringOptionKey const	output_tag
BooleanOptionKey const	save_times

Variable Documentation

chname

BooleanOptionKey const basic::options::OptionKeys::out::chname

extern

Referenced by add_rosetta_options_0(), and main().

chtimestamp

BooleanOptionKey const basic::options::OptionKeys::out::chtimestamp

extern

Referenced by add_rosetta_options_0(), and main().

database_filter

StringVectorOptionKey const basic::options::OptionKeys::out::database_filter

extern

Referenced by add_rosetta_options_0().

database_protocol_id

IntegerOptionKey const basic::options::OptionKeys::out::database_protocol_id

extern

Referenced by add_rosetta_options_0().

dry_run

BooleanOptionKey const basic::options::OptionKeys::out::dry_run

extern

Referenced by add_rosetta_options_0().

level

IntegerOptionKey const basic::options::OptionKeys::out::level

extern

Referenced by binder::IncludeSet::add_decl(), binder::add_relevant_includes(), add_rosetta_options_0(), ConstraintToolMover::apply(), PickBAB::apply(), SphereSample::covering_radius_degrees(), do_clustering(), utility::xsd_util::generate_human_readable_recursive(), main(), SphereSample::num_sample(), OPT_KEY(), utility::xsd_util::output_all_tag_options(), SphereSample::pdb_from_level(), SphereSample::read_sphere_data(), SphereSample::sample_offset(), SphereSample::sanity_check(), NativeEnsemble::write_schema_to_db(), and NativeEnsemble::write_temperatures_to_db().

levels

StringVectorOptionKey const basic::options::OptionKeys::out::levels

extern

Referenced by add_rosetta_options_0().

membrane_pdb

BooleanOptionKey const basic::options::OptionKeys::out::membrane_pdb

extern

Referenced by add_rosetta_options_0().

membrane_pdb_thickness

RealOptionKey const basic::options::OptionKeys::out::membrane_pdb_thickness

extern

Referenced by add_rosetta_options_0(), and create_MPpose().

mmCIF

BooleanOptionKey const basic::options::OptionKeys::out::mmCIF

extern

Referenced by add_rosetta_options_0(), and set_file_output().

mmCIF_gz

BooleanOptionKey const basic::options::OptionKeys::out::mmCIF_gz

extern

Referenced by add_rosetta_options_0().

mmtf

BooleanOptionKey const basic::options::OptionKeys::out::mmtf

extern

Referenced by add_rosetta_options_0(), and set_file_output().

mmtf_gz

BooleanOptionKey const basic::options::OptionKeys::out::mmtf_gz

extern

Referenced by add_rosetta_options_0().

mover_controlled_output_name

BooleanOptionKey const basic::options::OptionKeys::out::mover_controlled_output_name

extern

Referenced by add_rosetta_options_0().

mpi_tracer_to_file

StringOptionKey const basic::options::OptionKeys::out::mpi_tracer_to_file

extern

Referenced by add_rosetta_options_0(), and main().

mute

StringVectorOptionKey const basic::options::OptionKeys::out::mute

extern

Referenced by add_rosetta_options_0(), main(), and basic::TracerImpl::super_mute_().

no_color

BooleanOptionKey const basic::options::OptionKeys::out::no_color

extern

Referenced by add_rosetta_options_0().

no_nstruct_label

BooleanOptionKey const basic::options::OptionKeys::out::no_nstruct_label

extern

Referenced by add_rosetta_options_0(), and main().

nooutput

BooleanOptionKey const basic::options::OptionKeys::out::nooutput

extern

Referenced by add_rosetta_options_0(), main(), and register_options().

nstruct

IntegerOptionKey const basic::options::OptionKeys::out::nstruct

extern

Referenced by add_rosetta_options_0(), dock(), doit(), fill_required_options(), gpu_score_test(), insert_stage_tag(), main(), my_main(), and StepWiseJobQueen::StepWiseJobQueen().

out

BooleanOptionKey const basic::options::OptionKeys::out::out

extern

Referenced by add_rosetta_options_0().

output

BooleanOptionKey const basic::options::OptionKeys::out::output

extern

Referenced by add_rosetta_options_0(), and main().

output_tag

StringOptionKey const basic::options::OptionKeys::out::output_tag

extern

Referenced by add_rosetta_options_0(), main(), and my_main().

overwrite

BooleanOptionKey const basic::options::OptionKeys::out::overwrite

extern

Referenced by add_rosetta_options_0(), main(), set_basic_dock_options(), and StepWiseJobQueen::StepWiseJobQueen().

pdb

BooleanOptionKey const basic::options::OptionKeys::out::pdb

extern

Referenced by add_rosetta_options_0(), fill_optional_options(), main(), and register_options().

pdb_gz

BooleanOptionKey const basic::options::OptionKeys::out::pdb_gz

extern

Referenced by add_rosetta_options_0(), fill_optional_options(), main(), my_main(), and report().

prefix

StringOptionKey const basic::options::OptionKeys::out::prefix

extern

Referenced by add_rosetta_options_0(), HolesTrainingDataMover::apply(), SSM_energies::apply(), SimulateCryoMover::apply(), dna_motif_matcher(), main(), motif_dna_packer_design(), output_results(), register_options(), report_and_dump(), retag(), apps::pilot::momeara::HBondConformation::run_example_hbond_sweep(), set_file_output(), and test().

resume_batch

IntegerVectorOptionKey const basic::options::OptionKeys::out::resume_batch

extern

Referenced by add_rosetta_options_0().

save_times

BooleanOptionKey const basic::options::OptionKeys::out::save_times

extern

Referenced by add_rosetta_options_0().

scorecut

RealOptionKey const basic::options::OptionKeys::out::scorecut

extern

Referenced by add_rosetta_options_0(), main(), and read_silent_input_as_library().

sf

FileOptionKey const basic::options::OptionKeys::out::sf

extern

Referenced by add_rosetta_options_0(), adesign(), align_sf4(), align_zns(), analyze_interface_test(), protocols::abinitio::ApplicationContext::ApplicationContext(), HolesTrainingDataMover::apply(), FaSolReporter::apply(), LigandDockingHbondsReporter::apply(), CalcCdrRms::apply(), FloatScMonteCarlo::apply(), CrystDesign::apply(), CrystRelax::apply(), bb_sample(), BBG8T3A_sample(), cen_design(), compute(), MatchSet::cross(), MatchSet::cross_homodimer(), dab_sasa(), ddg(), HubDenovo::design(), design(), design_1comp(), design_AFILV(), design_AFILVEK(), design_AL(), design_all(), CrystDesign::design_cycle(), design_dyad(), design_FILV(), design_FILVEK(), design_hits(), design_homodimer(), design_pose_motifs_only(), design_target(), design_using_resfile(), CrystDesign::do_reversion(), do_rtmin(), do_sc_min(), do_sc_relax(), dock(), doit(), dostuff(), CrystDesign::filter_and_report(), find_buried_unsatisfied_polars(), fixbb_design(), generate_disulfide_conformations(), PoseWrap::get_closest_res_for_sc_attach(), get_ddg(), get_des_pos(), get_elec_score(), get_hbond_score(), get_interface_energies(), get_packing_score(), get_perresE(), get_rotset(), gpu_refold_test(), gpu_score_test(), CrystDesign::greedy_revert_unsats(), harvest_motifs(), interface_energy_ratio(), linmin(), main(), HubDenovo::min_as_poly_ala(), minimize(), MoveThenFixHMin::MoveThenFixHMin(), myoptH(), RTminOptMultifunc::operator()(), SSM_energies::optimization_loop(), output_score(), refine(), protocols::abinitio::ApplicationContext::register_options(), protocols::abinitio::JumpSpecificAbrelax::register_options(), repack(), repack_all(), repack_iface(), run(), run_3bpy(), run_diiron_glu(), run_m8(), run_tyr_his(), run_zn2his(), sample_torsions(), scheme_score(), ScMinMover::ScMinMover(), protocols::abinitio::JumpSpecificAbrelax::setup(), sicdock_thread_num(), symm_self_rep(), test(), test_cofactor(), test_suck_res(), unsatisfied_buried_polars(), and ui::viewers::ScoreFileView::update_ui_from_file_data().

show_accessed_options

BooleanOptionKey const basic::options::OptionKeys::out::show_accessed_options

extern

Referenced by add_rosetta_options_0().

show_unused_options

BooleanOptionKey const basic::options::OptionKeys::out::show_unused_options

extern

Referenced by add_rosetta_options_0().

shuffle_nstruct

IntegerOptionKey const basic::options::OptionKeys::out::shuffle_nstruct

extern

Referenced by add_rosetta_options_0().

silent_gz

BooleanOptionKey const basic::options::OptionKeys::out::silent_gz

extern

Referenced by add_rosetta_options_0(), fill_optional_options(), and main().

std_IO_exit_error_code

IntegerOptionKey const basic::options::OptionKeys::out::std_IO_exit_error_code

extern

Referenced by add_rosetta_options_0().

suffix

StringOptionKey const basic::options::OptionKeys::out::suffix

extern

Referenced by add_rosetta_options_0(), get_filename(), main(), numeric::kinematic_closure::operator<<(), register_options(), rna_design_test(), and set_file_output().

unmute

StringVectorOptionKey const basic::options::OptionKeys::out::unmute

extern

Referenced by add_rosetta_options_0(), and main().

use_database

BooleanOptionKey const basic::options::OptionKeys::out::use_database

extern

Referenced by add_rosetta_options_0(), and main().

user_tag

StringOptionKey const basic::options::OptionKeys::out::user_tag

extern

Referenced by add_rosetta_options_0(), align_pdbs(), and main().