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Rosetta
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| BooleanOptionKey const | DomainAssembly |
| BooleanOptionKey const | da_setup |
| FileOptionKey const | da_setup_option_file |
| FileOptionKey const | da_setup_output_pdb |
| FileOptionKey const | da_linker_file |
| FileOptionKey const | da_require_buried |
| FileOptionKey const | da_start_pdb |
| BooleanOptionKey const | run_fullatom |
| BooleanOptionKey const | run_centroid |
| BooleanOptionKey const | run_centroid_abinitio |
| IntegerOptionKey const | da_nruns |
| IntegerOptionKey const | da_start_pdb_num |
| FileOptionKey const | da_linker_file_rna |
| StringOptionKey const | residues_repack_only |
| FileOptionKey const | da_eval_pose_map |
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