basic::options::OptionKeys::lh Namespace Reference

Namespaces
	fragpdb
	symfragrm

Variables
BooleanOptionKey const	lh
IntegerVectorOptionKey const	loopsizes
IntegerOptionKey const	num_partitions
PathOptionKey const	db_path
BooleanOptionKey const	exclude_homo
BooleanOptionKey const	bss
StringOptionKey const	refstruct
StringOptionKey const	homo_file
RealVectorOptionKey const	createdb_rms_cutoff
RealOptionKey const	min_bbrms
RealOptionKey const	max_bbrms
RealOptionKey const	min_rms
RealOptionKey const	max_rms
BooleanOptionKey const	filter_by_phipsi
IntegerOptionKey const	max_radius
IntegerOptionKey const	max_struct
IntegerOptionKey const	max_struct_per_radius
RealOptionKey const	grid_space_multiplier
RealOptionKey const	grid_angle_multiplier
IntegerOptionKey const	skim_size
IntegerOptionKey const	rounds
StringOptionKey const	jobname
IntegerOptionKey const	max_lib_size
IntegerOptionKey const	max_emperor_lib_size
IntegerOptionKey const	max_emperor_lib_round
IntegerOptionKey const	library_expiry_time
StringOptionKey const	objective_function
IntegerOptionKey const	expire_after_rounds
StringOptionKey const	mpi_resume
StringOptionKey const	mpi_feedback
IntegerOptionKey const	mpi_batch_relax_chunks
IntegerOptionKey const	mpi_batch_relax_absolute_max
IntegerOptionKey const	mpi_outbound_wu_buffer_size
IntegerOptionKey const	mpi_loophash_split_size
RealOptionKey const	mpi_metropolis_temp
IntegerOptionKey const	mpi_save_state_interval
BooleanOptionKey const	mpi_master_save_score_only
IntegerOptionKey const	max_loophash_per_structure
RealOptionKey const	prob_terminus_ramapert
RealOptionKey const	rms_limit
RealOptionKey const	similarity_reference
BooleanOptionKey const	centroid_only
BooleanOptionKey const	write_centroid_structs
BooleanOptionKey const	write_all_fa_structs
BooleanOptionKey const	sandbox
BooleanOptionKey const	create_db
FileOptionKey const	sample_weight_file
RealOptionKey const	radius_size
IntegerOptionKey const	max_ref_lib_size
StringVectorOptionKey const	multi_objective_functions
StringVectorOptionKey const	additional_objective_functions
RealOptionKey const	edensity_weight_for_sampling
StringOptionKey const	mpi_master_schfile
IntegerVectorOptionKey const	mpi_master_cpu_weight
StringOptionKey const	mpi_loophash_scan_type
BooleanOptionKey const	mpi_read_structure_for_emperor
BooleanOptionKey const	mpi_packmin_init
IntegerOptionKey const	max_sample_per_structure
StringOptionKey const	loop_string
StringOptionKey const	seg_string
StringVectorOptionKey const	loopresdef
BooleanOptionKey const	pert_init_loop
RealOptionKey const	NMdist
RealVectorOptionKey const	objective_dominate_cut
RealVectorOptionKey const	objective_cut_increment
StringOptionKey const	similarity_method
StringOptionKey const	similarity_measure
RealOptionKey const	similarity_tolerance
RealOptionKey const	parent_selection_kT
StringOptionKey const	sim_replace_obj
RealOptionKey const	ulr_mulfactor
BooleanOptionKey const	filter_up_to_maxlib
BooleanOptionKey const	minimize_after_nmsearch

Variable Documentation

additional_objective_functions

StringVectorOptionKey const basic::options::OptionKeys::lh::additional_objective_functions

extern

bss

BooleanOptionKey const basic::options::OptionKeys::lh::bss

extern

Referenced by run_mc().

centroid_only

BooleanOptionKey const basic::options::OptionKeys::lh::centroid_only

extern

Referenced by LoopHashRelax_Sampler::apply().

create_db

BooleanOptionKey const basic::options::OptionKeys::lh::create_db

extern

createdb_rms_cutoff

RealVectorOptionKey const basic::options::OptionKeys::lh::createdb_rms_cutoff

extern

Referenced by main().

db_path

PathOptionKey const basic::options::OptionKeys::lh::db_path

extern

Referenced by ClosabilityScore::loophash_query().

edensity_weight_for_sampling

RealOptionKey const basic::options::OptionKeys::lh::edensity_weight_for_sampling

extern

exclude_homo

BooleanOptionKey const basic::options::OptionKeys::lh::exclude_homo

extern

expire_after_rounds

IntegerOptionKey const basic::options::OptionKeys::lh::expire_after_rounds

extern

filter_by_phipsi

BooleanOptionKey const basic::options::OptionKeys::lh::filter_by_phipsi

extern

filter_up_to_maxlib

BooleanOptionKey const basic::options::OptionKeys::lh::filter_up_to_maxlib

extern

grid_angle_multiplier

RealOptionKey const basic::options::OptionKeys::lh::grid_angle_multiplier

extern

grid_space_multiplier

RealOptionKey const basic::options::OptionKeys::lh::grid_space_multiplier

extern

homo_file

StringOptionKey const basic::options::OptionKeys::lh::homo_file

extern

jobname

StringOptionKey const basic::options::OptionKeys::lh::jobname

extern

Referenced by sasa_qdMover::apply(), IAMover::assign_IA_mover(), and extract_replica().

lh

BooleanOptionKey const basic::options::OptionKeys::lh::lh

extern

library_expiry_time

IntegerOptionKey const basic::options::OptionKeys::lh::library_expiry_time

extern

loop_string

StringOptionKey const basic::options::OptionKeys::lh::loop_string

extern

loopresdef

StringVectorOptionKey const basic::options::OptionKeys::lh::loopresdef

extern

loopsizes

IntegerVectorOptionKey const basic::options::OptionKeys::lh::loopsizes

extern

Referenced by main(), and test_lh_counts().

max_bbrms

RealOptionKey const basic::options::OptionKeys::lh::max_bbrms

extern

max_emperor_lib_round

IntegerOptionKey const basic::options::OptionKeys::lh::max_emperor_lib_round

extern

max_emperor_lib_size

IntegerOptionKey const basic::options::OptionKeys::lh::max_emperor_lib_size

extern

max_lib_size

IntegerOptionKey const basic::options::OptionKeys::lh::max_lib_size

extern

max_loophash_per_structure

IntegerOptionKey const basic::options::OptionKeys::lh::max_loophash_per_structure

extern

max_radius

IntegerOptionKey const basic::options::OptionKeys::lh::max_radius

extern

max_ref_lib_size

IntegerOptionKey const basic::options::OptionKeys::lh::max_ref_lib_size

extern

max_rms

RealOptionKey const basic::options::OptionKeys::lh::max_rms

extern

Referenced by main().

max_sample_per_structure

IntegerOptionKey const basic::options::OptionKeys::lh::max_sample_per_structure

extern

max_struct

IntegerOptionKey const basic::options::OptionKeys::lh::max_struct

extern

Referenced by myspace::Scheduler::setup_LHsampler().

max_struct_per_radius

IntegerOptionKey const basic::options::OptionKeys::lh::max_struct_per_radius

extern

min_bbrms

RealOptionKey const basic::options::OptionKeys::lh::min_bbrms

extern

min_rms

RealOptionKey const basic::options::OptionKeys::lh::min_rms

extern

minimize_after_nmsearch

BooleanOptionKey const basic::options::OptionKeys::lh::minimize_after_nmsearch

extern

mpi_batch_relax_absolute_max

IntegerOptionKey const basic::options::OptionKeys::lh::mpi_batch_relax_absolute_max

extern

mpi_batch_relax_chunks

IntegerOptionKey const basic::options::OptionKeys::lh::mpi_batch_relax_chunks

extern

mpi_feedback

StringOptionKey const basic::options::OptionKeys::lh::mpi_feedback

extern

mpi_loophash_scan_type

StringOptionKey const basic::options::OptionKeys::lh::mpi_loophash_scan_type

extern

mpi_loophash_split_size

IntegerOptionKey const basic::options::OptionKeys::lh::mpi_loophash_split_size

extern

mpi_master_cpu_weight

IntegerVectorOptionKey const basic::options::OptionKeys::lh::mpi_master_cpu_weight

extern

Referenced by MPI_Refinement_Launcher::run().

mpi_master_save_score_only

BooleanOptionKey const basic::options::OptionKeys::lh::mpi_master_save_score_only

extern

mpi_master_schfile

StringOptionKey const basic::options::OptionKeys::lh::mpi_master_schfile

extern

mpi_metropolis_temp

RealOptionKey const basic::options::OptionKeys::lh::mpi_metropolis_temp

extern

mpi_outbound_wu_buffer_size

IntegerOptionKey const basic::options::OptionKeys::lh::mpi_outbound_wu_buffer_size

extern

mpi_packmin_init

BooleanOptionKey const basic::options::OptionKeys::lh::mpi_packmin_init

extern

mpi_read_structure_for_emperor

BooleanOptionKey const basic::options::OptionKeys::lh::mpi_read_structure_for_emperor

extern

mpi_resume

StringOptionKey const basic::options::OptionKeys::lh::mpi_resume

extern

mpi_save_state_interval

IntegerOptionKey const basic::options::OptionKeys::lh::mpi_save_state_interval

extern

multi_objective_functions

StringVectorOptionKey const basic::options::OptionKeys::lh::multi_objective_functions

extern

NMdist

RealOptionKey const basic::options::OptionKeys::lh::NMdist

extern

num_partitions

IntegerOptionKey const basic::options::OptionKeys::lh::num_partitions

extern

Referenced by main().

objective_cut_increment

RealVectorOptionKey const basic::options::OptionKeys::lh::objective_cut_increment

extern

objective_dominate_cut

RealVectorOptionKey const basic::options::OptionKeys::lh::objective_dominate_cut

extern

objective_function

StringOptionKey const basic::options::OptionKeys::lh::objective_function

extern

parent_selection_kT

RealOptionKey const basic::options::OptionKeys::lh::parent_selection_kT

extern

pert_init_loop

BooleanOptionKey const basic::options::OptionKeys::lh::pert_init_loop

extern

prob_terminus_ramapert

RealOptionKey const basic::options::OptionKeys::lh::prob_terminus_ramapert

extern

radius_size

RealOptionKey const basic::options::OptionKeys::lh::radius_size

extern

Referenced by main().

refstruct

StringOptionKey const basic::options::OptionKeys::lh::refstruct

extern

rms_limit

RealOptionKey const basic::options::OptionKeys::lh::rms_limit

extern

Referenced by processChild().

rounds

IntegerOptionKey const basic::options::OptionKeys::lh::rounds

extern

Referenced by CartPerturber::add_rounds(), LoopHashRelax_Sampler::apply(), do_erraser2(), pointGroupHit::expand(), expand_all_and_check_if_forms_lattice(), fill_input_poses_based_on_possible_checkpoints(), main(), minimize_protocol(), and CartPerturber::set_rounds().

sample_weight_file

FileOptionKey const basic::options::OptionKeys::lh::sample_weight_file

extern

sandbox

BooleanOptionKey const basic::options::OptionKeys::lh::sandbox

extern

seg_string

StringOptionKey const basic::options::OptionKeys::lh::seg_string

extern

sim_replace_obj

StringOptionKey const basic::options::OptionKeys::lh::sim_replace_obj

extern

similarity_measure

StringOptionKey const basic::options::OptionKeys::lh::similarity_measure

extern

similarity_method

StringOptionKey const basic::options::OptionKeys::lh::similarity_method

extern

similarity_reference

RealOptionKey const basic::options::OptionKeys::lh::similarity_reference

extern

similarity_tolerance

RealOptionKey const basic::options::OptionKeys::lh::similarity_tolerance

extern

skim_size

IntegerOptionKey const basic::options::OptionKeys::lh::skim_size

extern

Referenced by LoopHashRelax_Sampler::apply().

ulr_mulfactor

RealOptionKey const basic::options::OptionKeys::lh::ulr_mulfactor

extern

write_all_fa_structs

BooleanOptionKey const basic::options::OptionKeys::lh::write_all_fa_structs

extern

Referenced by LoopHashRelax_Sampler::apply().

write_centroid_structs

BooleanOptionKey const basic::options::OptionKeys::lh::write_centroid_structs

extern

Referenced by LoopHashRelax_Sampler::apply().