basic::options::OptionKeys::hydrate Namespace Reference

Variables
BooleanOptionKey const	hydrate
FileOptionKey const	hyfile
BooleanOptionKey const	hydrate_all
IntegerVectorOptionKey const	ignore_fa_sol_at_positions
BooleanOptionKey const	attempt_all_polar
RealOptionKey const	partial_hydrate_dew
RealOptionKey const	water_energy_threshold
IntegerOptionKey const	water_rotamers_cap
RealOptionKey const	water_packing_radius
RealOptionKey const	water_angular_resolution
RealOptionKey const	water_space_resolution
RealOptionKey const	hbond_threshold
RealOptionKey const	hbond_entropy_threshold
RealOptionKey const	water_desolvation
IntegerOptionKey const	pack_nloop
BooleanOptionKey const	pre_bump_check
BooleanOptionKey const	bias_design_search_to_native
BooleanOptionKey const	show_derivatives_check
BooleanOptionKey const	keep_non_buried_waters
BooleanOptionKey const	display_water_hb_network
BooleanOptionKey const	show_pre_post_filter_water_rotamers
BooleanOptionKey const	show_pre_filtered_water_rotamers_count
BooleanOptionKey const	show_residues_near_water
BooleanOptionKey const	only_remove_non_buried_waters
BooleanOptionKey const	just_score
BooleanOptionKey const	show_rotamer_count
StringOptionKey const	protein_flexibility
RealOptionKey const	near_water_threshold
BooleanOptionKey const	minimize_bb_where_packing
BooleanOptionKey const	dont_hydrate_hb_engaged_bb_O
BooleanOptionKey const	short_residence_time_mode
FileOptionKey const	min_backbone_file
BooleanOptionKey const	single_away_rotamer
BooleanOptionKey const	force_enforce_all_waters

Variable Documentation

attempt_all_polar

BooleanOptionKey const basic::options::OptionKeys::hydrate::attempt_all_polar

extern

bias_design_search_to_native

BooleanOptionKey const basic::options::OptionKeys::hydrate::bias_design_search_to_native

extern

display_water_hb_network

BooleanOptionKey const basic::options::OptionKeys::hydrate::display_water_hb_network

extern

dont_hydrate_hb_engaged_bb_O

BooleanOptionKey const basic::options::OptionKeys::hydrate::dont_hydrate_hb_engaged_bb_O

extern

force_enforce_all_waters

BooleanOptionKey const basic::options::OptionKeys::hydrate::force_enforce_all_waters

extern

hbond_entropy_threshold

RealOptionKey const basic::options::OptionKeys::hydrate::hbond_entropy_threshold

extern

hbond_threshold

RealOptionKey const basic::options::OptionKeys::hydrate::hbond_threshold

extern

hydrate

BooleanOptionKey const basic::options::OptionKeys::hydrate::hydrate

extern

hydrate_all

BooleanOptionKey const basic::options::OptionKeys::hydrate::hydrate_all

extern

hyfile

FileOptionKey const basic::options::OptionKeys::hydrate::hyfile

extern

ignore_fa_sol_at_positions

IntegerVectorOptionKey const basic::options::OptionKeys::hydrate::ignore_fa_sol_at_positions

extern

just_score

BooleanOptionKey const basic::options::OptionKeys::hydrate::just_score

extern

Referenced by dinucleotide_test().

keep_non_buried_waters

BooleanOptionKey const basic::options::OptionKeys::hydrate::keep_non_buried_waters

extern

min_backbone_file

FileOptionKey const basic::options::OptionKeys::hydrate::min_backbone_file

extern

minimize_bb_where_packing

BooleanOptionKey const basic::options::OptionKeys::hydrate::minimize_bb_where_packing

extern

near_water_threshold

RealOptionKey const basic::options::OptionKeys::hydrate::near_water_threshold

extern

only_remove_non_buried_waters

BooleanOptionKey const basic::options::OptionKeys::hydrate::only_remove_non_buried_waters

extern

pack_nloop

IntegerOptionKey const basic::options::OptionKeys::hydrate::pack_nloop

extern

partial_hydrate_dew

RealOptionKey const basic::options::OptionKeys::hydrate::partial_hydrate_dew

extern

pre_bump_check

BooleanOptionKey const basic::options::OptionKeys::hydrate::pre_bump_check

extern

protein_flexibility

StringOptionKey const basic::options::OptionKeys::hydrate::protein_flexibility

extern

short_residence_time_mode

BooleanOptionKey const basic::options::OptionKeys::hydrate::short_residence_time_mode

extern

show_derivatives_check

BooleanOptionKey const basic::options::OptionKeys::hydrate::show_derivatives_check

extern

show_pre_filtered_water_rotamers_count

BooleanOptionKey const basic::options::OptionKeys::hydrate::show_pre_filtered_water_rotamers_count

extern

show_pre_post_filter_water_rotamers

BooleanOptionKey const basic::options::OptionKeys::hydrate::show_pre_post_filter_water_rotamers

extern

show_residues_near_water

BooleanOptionKey const basic::options::OptionKeys::hydrate::show_residues_near_water

extern

show_rotamer_count

BooleanOptionKey const basic::options::OptionKeys::hydrate::show_rotamer_count

extern

single_away_rotamer

BooleanOptionKey const basic::options::OptionKeys::hydrate::single_away_rotamer

extern

water_angular_resolution

RealOptionKey const basic::options::OptionKeys::hydrate::water_angular_resolution

extern

water_desolvation

RealOptionKey const basic::options::OptionKeys::hydrate::water_desolvation

extern

water_energy_threshold

RealOptionKey const basic::options::OptionKeys::hydrate::water_energy_threshold

extern

water_packing_radius

RealOptionKey const basic::options::OptionKeys::hydrate::water_packing_radius

extern

water_rotamers_cap

IntegerOptionKey const basic::options::OptionKeys::hydrate::water_rotamers_cap

extern

water_space_resolution

RealOptionKey const basic::options::OptionKeys::hydrate::water_space_resolution

extern