basic::options::OptionKeys::loodo Namespace Reference

Variables
BooleanOptionKey const	loodo
IntegerOptionKey const	ins_begin
StringOptionKey const	cap
StringOptionKey const	bot
IntegerVectorOptionKey const	fragAlength
IntegerVectorOptionKey const	fragBlength
IntegerOptionKey const	known
StringOptionKey const	fragAnative
StringOptionKey const	fragBnative
StringOptionKey const	gridligpath
BooleanOptionKey const	debug
RealOptionKey const	ca_ratio
RealOptionKey const	distance_tolerance
RealOptionKey const	euler_tolerance
IntegerOptionKey const	num_frags
StringOptionKey const	use_fraglib
StringOptionKey const	use_fraglibsc
BooleanOptionKey const	com_in_grid
BooleanOptionKey const	loud
BooleanOptionKey const	dump_all_As
BooleanOptionKey const	dump_all_Bs
StringOptionKey const	caphit_rt_file

Variable Documentation

bot

StringOptionKey const basic::options::OptionKeys::loodo::bot

extern

Referenced by main().

ca_ratio

RealOptionKey const basic::options::OptionKeys::loodo::ca_ratio

extern

Referenced by containment_and_clash_checks(), and main().

cap

StringOptionKey const basic::options::OptionKeys::loodo::cap

extern

Referenced by correct_dunbrack(), correct_rama(), and main().

caphit_rt_file

StringOptionKey const basic::options::OptionKeys::loodo::caphit_rt_file

extern

Referenced by main().

com_in_grid

BooleanOptionKey const basic::options::OptionKeys::loodo::com_in_grid

extern

Referenced by containment_and_clash_checks(), and main().

debug

BooleanOptionKey const basic::options::OptionKeys::loodo::debug

extern

Referenced by main().

distance_tolerance

RealOptionKey const basic::options::OptionKeys::loodo::distance_tolerance

extern

Referenced by main(), and numeric::model_quality::maxsub().

dump_all_As

BooleanOptionKey const basic::options::OptionKeys::loodo::dump_all_As

extern

Referenced by main().

dump_all_Bs

BooleanOptionKey const basic::options::OptionKeys::loodo::dump_all_Bs

extern

Referenced by main().

euler_tolerance

RealOptionKey const basic::options::OptionKeys::loodo::euler_tolerance

extern

Referenced by main(), and real6_similarity().

fragAlength

IntegerVectorOptionKey const basic::options::OptionKeys::loodo::fragAlength

extern

Referenced by main().

fragAnative

StringOptionKey const basic::options::OptionKeys::loodo::fragAnative

extern

Referenced by main().

fragBlength

IntegerVectorOptionKey const basic::options::OptionKeys::loodo::fragBlength

extern

Referenced by main().

fragBnative

StringOptionKey const basic::options::OptionKeys::loodo::fragBnative

extern

Referenced by main().

gridligpath

StringOptionKey const basic::options::OptionKeys::loodo::gridligpath

extern

Referenced by make_active_site_grid().

ins_begin

IntegerOptionKey const basic::options::OptionKeys::loodo::ins_begin

extern

Referenced by get_vallfrags(), main(), and perturb().

known

IntegerOptionKey const basic::options::OptionKeys::loodo::known

extern

Referenced by main(), and molten_get_vallfrags().

loodo

BooleanOptionKey const basic::options::OptionKeys::loodo::loodo

extern

loud

BooleanOptionKey const basic::options::OptionKeys::loodo::loud

extern

Referenced by main().

num_frags

IntegerOptionKey const basic::options::OptionKeys::loodo::num_frags

extern

Referenced by DockFragmentsMover::cluster_frags(), get_vallfrags(), main(), and molten_get_vallfrags().

use_fraglib

StringOptionKey const basic::options::OptionKeys::loodo::use_fraglib

extern

Referenced by get_vallfrags(), main(), and molten_get_vallfrags().

use_fraglibsc

StringOptionKey const basic::options::OptionKeys::loodo::use_fraglibsc

extern