RMS_ScoringScheme Class Reference

Inheritance diagram for RMS_ScoringScheme:

Public Member Functions
	RMS_ScoringScheme (Size const len)
core::sequence::ScoringSchemeOP	clone () const
Real	score (core::sequence::SequenceOP seq1, core::sequence::SequenceOP seq2, Size pos1, Size pos2)
Size	length () const

Private Attributes
Size	length_

Constructor & Destructor Documentation

RMS_ScoringScheme()

RMS_ScoringScheme::RMS_ScoringScheme ( Size const  len )

inline

Referenced by clone(), and main().

Member Function Documentation

clone()

core::sequence::ScoringSchemeOP RMS_ScoringScheme::clone ( ) const

inline

References RMS_ScoringScheme().

length()

Size RMS_ScoringScheme::length ( ) const

inline

References length_.

Referenced by enumerate_junctions.Design::attach_valid(), enumerate_junctions.Design::output_string(), enumerate_junctions.Design::output_valid(), enumerate_junctions.DHR::print(), enumerate_junctions.Junction::print(), score(), enumerate_junctions.Junction::to_component(), enumerate_junctions.DHR::write_to_file(), and enumerate_junctions.Junction::write_to_file().

score()

Real RMS_ScoringScheme::score ( core::sequence::SequenceOP  seq1, core::sequence::SequenceOP  seq2, Size  pos1, Size  pos2  )

inline

References numeric::model_quality::calc_rms(), create_a3b_hbs::ii, length(), min(), p2, loops_kic::rms, basic::options::OptionKeys::recces::seq1, and basic::options::OptionKeys::recces::seq2.

Member Data Documentation

length_

Size RMS_ScoringScheme::length_

private

Referenced by length().

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The documentation for this class was generated from the following file:

• src/apps/pilot/james/mammoth_hack.cc