basic::options::OptionKeys::msd Namespace Reference

Variables
basic::options::StringVectorOptionKey	positive_states ("msd:positive_states")
basic::options::StringVectorOptionKey	negative_states ("msd:negative_states")
basic::options::StringOptionKey	upper_chains ("msd:upper_chains")
basic::options::StringOptionKey	lower_chains ("msd:lower_chains")
basic::options::StringOptionKey	corr ("msd:corr")
basic::options::IntegerOptionKey	n_iterations ("msd:n_iterations")
basic::options::BooleanOptionKey	find_consensus ("msd:find_consensus")
basic::options::BooleanOptionKey	debug ("msd:debug")
basic::options::BooleanOptionKey	restrict_design_to_interface ("msd:restrict_design_to_interface")
basic::options::BooleanOptionKey	restrict_min_to_interface ("msd:restrict_min_to_interface")
basic::options::IntegerOptionKey	design_rounds ("msd:design_rounds")
basic::options::StringOptionKey	ramp ("msd:weight_ramp")
basic::options::RealOptionKey	favor_native ("msd:favor_native")
basic::options::BooleanOptionKey	soft_design ("msd:soft_design")
basic::options::BooleanOptionKey	fixed_bb ("msd:fixed_bb")
basic::options::FileVectorOptionKey	multiple_resfiles (" msd:multiple_resfiles")
basic::options::FileVectorOptionKey	multiple_constraints (" msd:multiple_constraints")

Variable Documentation

corr

basic::options::StringOptionKey basic::options::OptionKeys::msd::corr("msd:corr")

(

"msd:corr"

)

Referenced by myspace::find_best_projection().

debug

basic::options::BooleanOptionKey basic::options::OptionKeys::msd::debug

(

"msd:debug"

)

Referenced by CenRelaxMover::apply(), FloppyTailMover::apply(), SSM_energies::apply(), MinTestMover::apply(), MinCenrotMover::apply(), CenRotRelaxMover::apply(), RepackMinCenrotMover::apply(), apply_linked_constraints(), compare_chi1_2_angles(), compare_residues_and_chi1_2_angles(), CrystFFTDock::CrystFFTDock(), design_cluster(), doit(), find_clusters(), protocols::abinitio::JumpSpecificAbrelax::fold(), TCDock::init(), HECTAllMover::init_on_new_input(), HECTUBQMover::init_on_new_input(), isctfast(), main(), pyrosetta.distributed.tasks.taskbase.TaskBase::maybe_setup(), passes_quality_check(), register_options(), repack_cluster(), scheme_score(), sicfast(), and TCDock::TCDock().

design_rounds

basic::options::IntegerOptionKey basic::options::OptionKeys::msd::design_rounds

(

"msd:design_rounds"

)

Referenced by main().

favor_native

basic::options::RealOptionKey basic::options::OptionKeys::msd::favor_native

(

"msd:favor_native"

)

Referenced by design_cluster(), and main().

find_consensus

basic::options::BooleanOptionKey basic::options::OptionKeys::msd::find_consensus

(

"msd:find_consensus"

)

Referenced by main().

fixed_bb

basic::options::BooleanOptionKey basic::options::OptionKeys::msd::fixed_bb

(

"msd:fixed_bb"

)

Referenced by main().

lower_chains

basic::options::StringOptionKey basic::options::OptionKeys::msd::lower_chains

(

"msd:lower_chains"

)

Referenced by main().

multiple_constraints

basic::options::FileVectorOptionKey basic::options::OptionKeys::msd::multiple_constraints

(

" msd:multiple_constraints"

)

Referenced by main().

multiple_resfiles

basic::options::FileVectorOptionKey basic::options::OptionKeys::msd::multiple_resfiles

(

" msd:multiple_resfiles"

)

Referenced by main().

n_iterations

basic::options::IntegerOptionKey basic::options::OptionKeys::msd::n_iterations

(

"msd:n_iterations"

)

Referenced by main().

negative_states

basic::options::StringVectorOptionKey basic::options::OptionKeys::msd::negative_states

(

"msd:negative_states"

)

Referenced by main().

positive_states

basic::options::StringVectorOptionKey basic::options::OptionKeys::msd::positive_states

(

"msd:positive_states"

)

Referenced by main().

ramp

basic::options::StringOptionKey basic::options::OptionKeys::msd::ramp

(

"msd:weight_ramp"

)

Referenced by MinTestMover::apply(), main(), and RunPepSpec().

restrict_design_to_interface

basic::options::BooleanOptionKey basic::options::OptionKeys::msd::restrict_design_to_interface

(

"msd:restrict_design_to_interface"

)

Referenced by main().

restrict_min_to_interface

basic::options::BooleanOptionKey basic::options::OptionKeys::msd::restrict_min_to_interface

(

"msd:restrict_min_to_interface"

)

Referenced by main().

soft_design

basic::options::BooleanOptionKey basic::options::OptionKeys::msd::soft_design

(

"msd:soft_design"

)

Referenced by main().

upper_chains

basic::options::StringOptionKey basic::options::OptionKeys::msd::upper_chains

(

"msd:upper_chains"

)

Referenced by main().