apps::pilot::MultiTemplateAlignChunkMover Class Reference

#include <AlignChunkMover.hh>

Inheritance diagram for apps::pilot::MultiTemplateAlignChunkMover:

Public Member Functions
	MultiTemplateAlignChunkMover (numeric::random::RandomGenerator &RG, utility::vector1< core::pose::PoseOP > const &template_poses, Loops ss_chunks_pose, AlignOption align_option=all_chunks, Size max_registry_shift=0)
void	get_alignment_from_template (core::pose::PoseCOP const template_pose, std::map< core::Size, core::Size > &seqpos_alignment)
void	get_alignment_from_chunk_mapping (std::map< core::Size, core::Size > const &chunk_mapping, Loops const template_ss_chunks, Loops const target_ss_chunks, std::map< core::Size, core::Size > &sequence_alignment)
void	pick_random_template ()
void	pick_random_chunk (core::pose::Pose &pose)
Size	trial_counter (Size ires)
void	apply (core::pose::Pose &pose)
std::string	get_name () const

Private Attributes
AlignChunkMover	align_chunk_
numeric::random::RandomGenerator &	RG_
AlignOption	align_option_
utility::vector1< core::pose::PoseCOP >	template_poses_
utility::vector1< Loops >	template_ss_chunks_
utility::vector1< std::map< core::Size, core::Size > >	sequence_alignments_
Size	max_registry_shift_input_
utility::vector1< Size >	max_registry_shift_
Size	template_number_
Size	jump_number_

Constructor & Destructor Documentation

MultiTemplateAlignChunkMover()

apps::pilot::MultiTemplateAlignChunkMover::MultiTemplateAlignChunkMover ( numeric::random::RandomGenerator &  RG, utility::vector1< core::pose::PoseOP > const &  template_poses, Loops  ss_chunks_pose, AlignOption  align_option = all_chunks, Size  max_registry_shift = 0  )

inline

References challenge::aligned, challenge::chunk_mapping, count, create_a3b_hbs::i, option, subloop_histogram::size, basic::options::OptionKeys::inout::dbms::user, and utility_exit_with_message.

Member Function Documentation

apply()

void apps::pilot::MultiTemplateAlignChunkMover::apply ( core::pose::Pose &  pose )

inline

References beta_nonlocal::pose, and apps::pilot::random_chunk.

Referenced by pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase::__setitem__(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase::_maybe_delete_keys_from_sm_data(), apps::pilot::SampleSecondaryStructureAlignmentMover::apply(), and pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask::execute().

get_alignment_from_chunk_mapping()

void apps::pilot::MultiTemplateAlignChunkMover::get_alignment_from_chunk_mapping ( std::map< core::Size, core::Size > const &  chunk_mapping, Loops const  template_ss_chunks, Loops const  target_ss_chunks, std::map< core::Size, core::Size > &  sequence_alignment  )

inline

References challenge::chunk_mapping, oop_conformations::length, offset, and basic::options::OptionKeys::cutoutdomain::start.

get_alignment_from_template()

void apps::pilot::MultiTemplateAlignChunkMover::get_alignment_from_template ( core::pose::PoseCOP const  template_pose, std::map< core::Size, core::Size > &  seqpos_alignment  )

inline

get_name()

std::string apps::pilot::MultiTemplateAlignChunkMover::get_name ( ) const

inline

pick_random_chunk()

void apps::pilot::MultiTemplateAlignChunkMover::pick_random_chunk ( core::pose::Pose &  pose )

inline

References beta_nonlocal::pose.

pick_random_template()

void apps::pilot::MultiTemplateAlignChunkMover::pick_random_template ( )

inline

References subloop_histogram::size.

trial_counter()

Size apps::pilot::MultiTemplateAlignChunkMover::trial_counter ( Size  ires )

inline

Member Data Documentation

align_chunk_

AlignChunkMover apps::pilot::MultiTemplateAlignChunkMover::align_chunk_

private

align_option_

AlignOption apps::pilot::MultiTemplateAlignChunkMover::align_option_

private

jump_number_

Size apps::pilot::MultiTemplateAlignChunkMover::jump_number_

private

max_registry_shift_

utility::vector1< Size > apps::pilot::MultiTemplateAlignChunkMover::max_registry_shift_

private

max_registry_shift_input_

Size apps::pilot::MultiTemplateAlignChunkMover::max_registry_shift_input_

private

RG_

numeric::random::RandomGenerator& apps::pilot::MultiTemplateAlignChunkMover::RG_

private

sequence_alignments_

utility::vector1< std::map <core::Size, core::Size> > apps::pilot::MultiTemplateAlignChunkMover::sequence_alignments_

private

template_number_

Size apps::pilot::MultiTemplateAlignChunkMover::template_number_

private

template_poses_

utility::vector1< core::pose::PoseCOP > apps::pilot::MultiTemplateAlignChunkMover::template_poses_

private

template_ss_chunks_

utility::vector1< Loops > apps::pilot::MultiTemplateAlignChunkMover::template_ss_chunks_

private

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The documentation for this class was generated from the following file:

• src/apps/pilot/yfsong/AlignChunkMover.hh