basic::options::OptionKeys::mh::filter Namespace Reference

Variables
BooleanOptionKey const	filter
BooleanOptionKey const	filter_harvest
BooleanOptionKey const	filter_io
StringOptionKey const	pdb
StringOptionKey const	lig
StringOptionKey const	motif_type
StringOptionKey const	restype1
StringOptionKey const	restype2
StringOptionKey const	restype
StringOptionKey const	restype_one
StringOptionKey const	not_restype
StringOptionKey const	not_restype_one
IntegerOptionKey const	seqsep
IntegerOptionKey const	max_seqsep
BooleanOptionKey const	no_hb_bb
RealOptionKey const	mindist2
RealOptionKey const	maxdist2
StringOptionKey const	ss1
StringOptionKey const	ss2
StringOptionKey const	dssp1
StringOptionKey const	dssp2
StringOptionKey const	aa1
StringOptionKey const	aa2
RealOptionKey const	sasa
RealOptionKey const	faatr
RealOptionKey const	hb_sc
RealOptionKey const	hb_bb_sc
RealOptionKey const	hb_bb
RealOptionKey const	occupancy
RealOptionKey const	coorderr
BooleanOptionKey const	uniformfrag
RealOptionKey const	faatr_or_hbbb
RealOptionKey const	faatr_or_hb
BooleanOptionKey const	noloops
BooleanOptionKey const	oneloop
BooleanOptionKey const	nodisulf
RealOptionKey const	score

Variable Documentation

aa1

StringOptionKey const basic::options::OptionKeys::mh::filter::aa1

extern

aa2

StringOptionKey const basic::options::OptionKeys::mh::filter::aa2

extern

coorderr

RealOptionKey const basic::options::OptionKeys::mh::filter::coorderr

extern

dssp1

StringOptionKey const basic::options::OptionKeys::mh::filter::dssp1

extern

dssp2

StringOptionKey const basic::options::OptionKeys::mh::filter::dssp2

extern

faatr

RealOptionKey const basic::options::OptionKeys::mh::filter::faatr

extern

faatr_or_hb

RealOptionKey const basic::options::OptionKeys::mh::filter::faatr_or_hb

extern

faatr_or_hbbb

RealOptionKey const basic::options::OptionKeys::mh::filter::faatr_or_hbbb

extern

filter

BooleanOptionKey const basic::options::OptionKeys::mh::filter::filter

extern

filter_harvest

BooleanOptionKey const basic::options::OptionKeys::mh::filter::filter_harvest

extern

Referenced by harvest_motifs(), and sicdock_thread_num().

filter_io

BooleanOptionKey const basic::options::OptionKeys::mh::filter::filter_io

extern

hb_bb

RealOptionKey const basic::options::OptionKeys::mh::filter::hb_bb

extern

hb_bb_sc

RealOptionKey const basic::options::OptionKeys::mh::filter::hb_bb_sc

extern

Referenced by harvest_motifs_one().

hb_sc

RealOptionKey const basic::options::OptionKeys::mh::filter::hb_sc

extern

Referenced by harvest_motifs_one(), and sicdock_thread_num().

lig

StringOptionKey const basic::options::OptionKeys::mh::filter::lig

extern

Referenced by Tet4HMatchAligner::align_info(), Tet4HMatchAligner::bondedN(), main(), and run().

max_seqsep

IntegerOptionKey const basic::options::OptionKeys::mh::filter::max_seqsep

extern

maxdist2

RealOptionKey const basic::options::OptionKeys::mh::filter::maxdist2

extern

mindist2

RealOptionKey const basic::options::OptionKeys::mh::filter::mindist2

extern

motif_type

StringOptionKey const basic::options::OptionKeys::mh::filter::motif_type

extern

Referenced by harvest_scores(), and sicdock_thread_num().

no_hb_bb

BooleanOptionKey const basic::options::OptionKeys::mh::filter::no_hb_bb

extern

nodisulf

BooleanOptionKey const basic::options::OptionKeys::mh::filter::nodisulf

extern

Referenced by HubDenovo::stupid_ddg().

noloops

BooleanOptionKey const basic::options::OptionKeys::mh::filter::noloops

extern

not_restype

StringOptionKey const basic::options::OptionKeys::mh::filter::not_restype

extern

not_restype_one

StringOptionKey const basic::options::OptionKeys::mh::filter::not_restype_one

extern

occupancy

RealOptionKey const basic::options::OptionKeys::mh::filter::occupancy

extern

Referenced by Cluster::Cluster(), harvest_motifs(), main(), read_occupancy_data(), and sicdock_thread_num().

oneloop

BooleanOptionKey const basic::options::OptionKeys::mh::filter::oneloop

extern

pdb

StringOptionKey const basic::options::OptionKeys::mh::filter::pdb

extern

restype

StringOptionKey const basic::options::OptionKeys::mh::filter::restype

extern

restype1

StringOptionKey const basic::options::OptionKeys::mh::filter::restype1

extern

restype2

StringOptionKey const basic::options::OptionKeys::mh::filter::restype2

extern

Referenced by HotspotPlacementMover::apply(), and main().

restype_one

StringOptionKey const basic::options::OptionKeys::mh::filter::restype_one

extern

sasa

RealOptionKey const basic::options::OptionKeys::mh::filter::sasa

extern

score

RealOptionKey const basic::options::OptionKeys::mh::filter::score

extern

seqsep

IntegerOptionKey const basic::options::OptionKeys::mh::filter::seqsep

extern

ss1

StringOptionKey const basic::options::OptionKeys::mh::filter::ss1

extern

ss2

StringOptionKey const basic::options::OptionKeys::mh::filter::ss2

extern

uniformfrag

BooleanOptionKey const basic::options::OptionKeys::mh::filter::uniformfrag

extern