pyrosetta.io.silent_file_map.SilentFileMap Class Reference

Inheritance diagram for pyrosetta.io.silent_file_map.SilentFileMap:

Public Member Functions
def	__init__ (self, filename=None, data=None)
def	tags (self)
def	poses (self)
def	energies (self)
def	write_file (self, filename=None, force=False)
def	__getitem__ (self, tag_name)
def	__setitem__ (self, tag_name, structure)
def	__delitem__ (self, tag_name)
def	__len__ (self)
def	__iter__ (self)
def	__enter__ (self)
def	__exit__ (self, type, value, tb)

Public Attributes
	filename
	file_writable
	sdata

Detailed Description

Map class providing key-value interface to silent file data.

Constructor & Destructor Documentation

__init__()

def pyrosetta.io.silent_file_map.SilentFileMap.__init__	(		self,
			filename = None,
			data = None
	)

Initialize mapping over given filename or silent file data.
filename - Read silent data from given file if data not provided, default path for `write`.
data - String silent file data to load.

Referenced by pyrosetta.distributed.tasks.taskbase.TaskBase.__setstate__().

Member Function Documentation

__delitem__()

def pyrosetta.io.silent_file_map.SilentFileMap.__delitem__	(		self,
			tag_name
	)

Referenced by pyrosetta.bindings.pose.PoseScoreAccessor.__setitem__().

__enter__()

def pyrosetta.io.silent_file_map.SilentFileMap.__enter__

(

self

)

__exit__()

def pyrosetta.io.silent_file_map.SilentFileMap.__exit__	(		self,
			type,
			value,
			tb
	)

References pyrosetta.io.silent_file_map.SilentFileMap.write_file().

__getitem__()

def pyrosetta.io.silent_file_map.SilentFileMap.__getitem__	(		self,
			tag_name
	)

References pyrosetta.io.silent_file_map.SilentFilePoseAccessor.sdata, pyrosetta.io.silent_file_map.SilentFileEnergyAccessor.sdata, and pyrosetta.io.silent_file_map.SilentFileMap.sdata.

__iter__()

def pyrosetta.io.silent_file_map.SilentFileMap.__iter__

(

self

)

References pyrosetta.io.silent_file_map.SilentFileMap.tags().

__len__()

def pyrosetta.io.silent_file_map.SilentFileMap.__len__

(

self

)

References pyrosetta.io.silent_file_map.SilentFileMap.tags().

__setitem__()

def pyrosetta.io.silent_file_map.SilentFileMap.__setitem__	(		self,
			tag_name,
			structure
	)

References pyrosetta.io.silent_file_map.SilentFilePoseAccessor.sdata, pyrosetta.io.silent_file_map.SilentFileEnergyAccessor.sdata, and pyrosetta.io.silent_file_map.SilentFileMap.sdata.

energies()

def pyrosetta.io.silent_file_map.SilentFileMap.energies

(

self

)

Return SilentFileEnergiesAccessor over silent file map.

References pyrosetta.io.silent_file_map.SilentFilePoseAccessor.sdata, pyrosetta.io.silent_file_map.SilentFileEnergyAccessor.sdata, and pyrosetta.io.silent_file_map.SilentFileMap.sdata.

Referenced by pyrosetta.bindings.scores.core.PoseCacheAccessor.all(), and pyrosetta.bindings.scores.core.PoseCacheAccessor.all_scores().

poses()

def pyrosetta.io.silent_file_map.SilentFileMap.poses

(

self

)

Return SilentFilePoseAccessor over silent file map.

References pyrosetta.io.silent_file_map.SilentFilePoseAccessor.sdata, pyrosetta.io.silent_file_map.SilentFileEnergyAccessor.sdata, and pyrosetta.io.silent_file_map.SilentFileMap.sdata.

Referenced by pyrosetta.distributed.viewer.core.Viewer.__add__(), pyrosetta.distributed.viewer.core.Viewer.reset(), and pyrosetta.distributed.viewer.core.Viewer.show().

tags()

def pyrosetta.io.silent_file_map.SilentFileMap.tags

(

self

)

Return list of all tags in silent file data.

References basic::options::OptionKeys::in::file.list, pyrosetta.io.silent_file_map.SilentFilePoseAccessor.sdata, pyrosetta.io.silent_file_map.SilentFileEnergyAccessor.sdata, and pyrosetta.io.silent_file_map.SilentFileMap.sdata.

Referenced by pyrosetta.io.silent_file_map.SilentFileMap.__iter__(), and pyrosetta.io.silent_file_map.SilentFileMap.__len__().

write_file()

def pyrosetta.io.silent_file_map.SilentFileMap.write_file	(		self,
			filename = None,
			force = False
	)

Write file to given filename.

References pyrosetta.io.silent_file_map.SilentFileMap.file_writable, PoseAndData.filename, EnergyAndFilename.filename, pyrosetta.io.silent_file_map.SilentFileMap.filename, utility::io::izstream.filename(), utility::io::ozstream.filename(), pyrosetta.io.silent_file_map.SilentFilePoseAccessor.sdata, pyrosetta.io.silent_file_map.SilentFileEnergyAccessor.sdata, and pyrosetta.io.silent_file_map.SilentFileMap.sdata.

Referenced by pyrosetta.io.silent_file_map.SilentFileMap.__exit__().

Member Data Documentation

file_writable

pyrosetta.io.silent_file_map.SilentFileMap.file_writable

Referenced by pyrosetta.io.silent_file_map.SilentFileMap.write_file().

filename

pyrosetta.io.silent_file_map.SilentFileMap.filename

Referenced by pyrosetta.io.silent_file_map.SilentFileMap.write_file().

sdata

pyrosetta.io.silent_file_map.SilentFileMap.sdata

Referenced by pyrosetta.io.silent_file_map.SilentFilePoseAccessor.__getitem__(), pyrosetta.io.silent_file_map.SilentFileEnergyAccessor.__getitem__(), pyrosetta.io.silent_file_map.SilentFileMap.__getitem__(), pyrosetta.io.silent_file_map.SilentFileMap.__setitem__(), pyrosetta.io.silent_file_map.SilentFileMap.energies(), pyrosetta.io.silent_file_map.SilentFilePoseAccessor.keys(), pyrosetta.io.silent_file_map.SilentFileEnergyAccessor.keys(), pyrosetta.io.silent_file_map.SilentFileMap.poses(), pyrosetta.io.silent_file_map.SilentFileMap.tags(), and pyrosetta.io.silent_file_map.SilentFileMap.write_file().

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The documentation for this class was generated from the following file:

• src/python/PyRosetta/src/pyrosetta/io/silent_file_map.py