pyrosetta.bindings.scores.base.PoseCacheAccessorBase Class Reference

Inheritance diagram for pyrosetta.bindings.scores.base.PoseCacheAccessorBase:

Public Member Functions
def	__init__ (self, pose)
def	apply (self, metric, key, value)
def	__len__ (self)
def	__iter__ (self)
def	__str__ (self)

Public Attributes
	pose
	custom_real_value_metric
	custom_string_value_metric

Private Member Functions
def	_reserved_custom_metric_keys (self)
def	_reserved (self)
def	_sm_data_accessor_attrs (self)
def	_unsupported_sm_data_accessor_attrs (self)
def	_get_sm_data_dict (self, attributes)
def	_maybe_delete_keys_from_sm_data (self, keys=None, attributes=None)
def	_has_reserved_custom_metric_keys (self)
def	_maybe_delete_reserved_keys_from_sm_data (self)
def	_reserved_custom_metric_keys_warning (self)
def	_clobber_warning (self, msg)
def	_validate_set (self, key)
def	_validate_del (self, key)
def	_repr_pretty_ (self, p, cycle)

Static Private Attributes
tuple	__slots__ = ("pose",)

Additional Inherited Members
Static Public Member Functions inherited from pyrosetta.bindings.scores.serialization.PoseScoreSerializer
def	maybe_encode (value)
def	maybe_decode (value)
Static Public Member Functions inherited from pyrosetta.bindings.scores.serialization.PoseScoreSerializerBase
def	to_pickle (value)
def	from_pickle (value)
def	to_base64 (value)
def	from_base64 (value)
def	to_base64_pickle (value)
def	from_base64_pickle (value)
def	bool_from_str (value)

Detailed Description

Base methods for the `Pose.cache` scores accessor.

Constructor & Destructor Documentation

__init__()

def pyrosetta.bindings.scores.base.PoseCacheAccessorBase.__init__	(		self,
			pose
	)

Reimplemented in pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor, pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueProbabilitiesDataAccessor, pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueRealDataAccessor, pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueStringDataAccessor, pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeRealDataAccessor, pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeStringDataAccessor, pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor, pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor, pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase, pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor, pyrosetta.bindings.scores.extra_scores.ExtraStringScoresDataAccessor, pyrosetta.bindings.scores.extra_scores.ExtraFloatScoresDataAccessor, pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase, pyrosetta.bindings.scores.energies.EnergiesAccessor, and pyrosetta.bindings.scores.core.PoseCacheAccessor.

Referenced by pyrosetta.distributed.tasks.taskbase.TaskBase.__setstate__().

Member Function Documentation

__iter__()

def pyrosetta.bindings.scores.base.PoseCacheAccessorBase.__iter__

(

self

)

References pyrosetta.bindings.pose.PoseScoreAccessor.all(), pyrosetta.bindings.scores.core.PoseCacheAccessor.all(), pyrosetta.bindings.scores.energies.EnergiesAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraFloatScoresDataAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraStringScoresDataAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueProbabilitiesDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.all(), and ui::task::Node.all.

__len__()

def pyrosetta.bindings.scores.base.PoseCacheAccessorBase.__len__

(

self

)

References pyrosetta.bindings.pose.PoseScoreAccessor.all(), pyrosetta.bindings.scores.core.PoseCacheAccessor.all(), pyrosetta.bindings.scores.energies.EnergiesAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraFloatScoresDataAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraStringScoresDataAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueProbabilitiesDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.all(), ui::task::Node.all, and ObjexxFCL.len().

__str__()

def pyrosetta.bindings.scores.base.PoseCacheAccessorBase.__str__

(

self

)

References str().

_clobber_warning()

def pyrosetta.bindings.scores.base.PoseCacheAccessorBase._clobber_warning (   self,   msg  )

private

Issue a `ClobberWarning` warning with a message.

Referenced by pyrosetta.bindings.scores.core.PoseCacheAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor.all(), and pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.all().

_get_sm_data_dict()

def pyrosetta.bindings.scores.base.PoseCacheAccessorBase._get_sm_data_dict (   self,   attributes  )

private

References PDB_IOBenchmark.pose, ScoreBenchmark.pose, ShearMoverBenchmark.pose, SmallMoverBenchmark.pose, SamplingManager.pose, apps::pilot::KicSandbox.pose, PoseAndData.pose, PoseWrap.pose, MatchBase.pose, MatchLig.pose, SlideTask.pose(), HIT.pose, WorkDat.pose, pyrosetta.bindings.pose.PoseResidueAccessor.pose, pyrosetta.bindings.pose.PoseResidueLabelAccessor.pose, pyrosetta.bindings.pose.PoseScoreAccessor.pose, pyrosetta.bindings.scores.base.PoseCacheAccessorBase.pose, ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget.pose(), pyrosetta.distributed.packed_pose.core.PackedPose.pose(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.pose, test.T010_LoadPDB.LoadPDBTest.pose, and test.T300_PyJobDistributor.TestPyJobDistributor.pose.

Referenced by pyrosetta.bindings.scores.base.PoseCacheAccessorBase._maybe_delete_keys_from_sm_data().

_has_reserved_custom_metric_keys()

def pyrosetta.bindings.scores.base.PoseCacheAccessorBase._has_reserved_custom_metric_keys (   self )

private

References PDB_IOBenchmark.pose, ScoreBenchmark.pose, ShearMoverBenchmark.pose, SmallMoverBenchmark.pose, SamplingManager.pose, apps::pilot::KicSandbox.pose, PoseAndData.pose, PoseWrap.pose, MatchBase.pose, MatchLig.pose, SlideTask.pose(), HIT.pose, WorkDat.pose, pyrosetta.bindings.pose.PoseResidueAccessor.pose, pyrosetta.bindings.pose.PoseResidueLabelAccessor.pose, pyrosetta.bindings.pose.PoseScoreAccessor.pose, pyrosetta.bindings.scores.base.PoseCacheAccessorBase.pose, ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget.pose(), pyrosetta.distributed.packed_pose.core.PackedPose.pose(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.pose, test.T010_LoadPDB.LoadPDBTest.pose, and test.T300_PyJobDistributor.TestPyJobDistributor.pose.

Referenced by pyrosetta.bindings.scores.base.PoseCacheAccessorBase._maybe_delete_reserved_keys_from_sm_data(), and pyrosetta.bindings.scores.base.PoseCacheAccessorBase._reserved_custom_metric_keys_warning().

_maybe_delete_keys_from_sm_data()

def pyrosetta.bindings.scores.base.PoseCacheAccessorBase._maybe_delete_keys_from_sm_data (   self,   keys = None,   attributes = None  )

private

Cache, clear, and restore all SimpleMetric data except the provided keys
in the provided `SimpleMetricDataAccessor` attributes. This is necessary to
delete one or more keys, since `clear_sm_data` clears all SimpleMetric data.

References pyrosetta.bindings.scores.base.PoseCacheAccessorBase._get_sm_data_dict(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._sm_data_accessor_attrs(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._unsupported_sm_data_accessor_attrs(), CartPerturber.apply(), numeric::BodyPosition< T >.apply(), CountContact.apply(), AssignClusterToolMover.apply(), EnvToolMover.apply(), MinToolMover.apply(), ScoreMover.apply(), OutputMover.apply(), ConstraintToolMover.apply(), RmsfMover.apply(), FitMover.apply(), RDCToolMover.apply(), Protocol_MolecularDynamics.apply(), ZincMatchFilter.apply(), zinc1_homodimer_setup.apply(), CalcIrms.apply(), RMSByResStatistics.apply(), BuriedUnsatPolarsFinder.apply(), HbondZinc.apply(), HbondZincBackbone.apply(), xtal_water_bunsat.apply(), zinc_helix_cap.apply(), ZincMinimize.apply(), CollectCoordinates.apply(), GunnTest.apply(), PrintFeatures.apply(), protocols::abinitio::Stage1Sampler.apply(), RotateSAXS.apply(), DougsDockDesignMinimizeMagicMover.apply(), PeptoidDihedralGrabber.apply(), PeptiodMovieMover.apply(), PeptoidRotamerRecoverer.apply(), CartRefineWrapperMover.apply(), CenRelaxMover.apply(), dsRNA_grow.apply(), MirrorSymmTest.apply(), AbInitio_MPI.apply(), HemeBindingMover.apply(), HemeReplace.apply(), GraftDesignCDRs.apply(), protocols::antibody::design::AntibodyDesignMoverGenerator.apply(), RelaxCDRsMover.apply(), TestMMOP.apply(), InterfaceFeaturesTests.apply(), myspace::GraftTester.apply(), SuperDeviationMover.apply(), ComputeProfileMover.apply(), PrintSequenceMover.apply(), ConstraintMinimizer.apply(), InteractionDistMinimizer.apply(), ConstraintStatsMover.apply(), SpartaSuperDeviationMover.apply(), InjectorMover.apply(), StatefulMover.apply(), InverseRotlibDumpMover.apply(), khSandbox.apply(), khSandbox2.apply(), KHSandbox.apply(), abbinding.apply(), mtransferase.apply(), PhDocking.apply(), PhProtocol.apply(), DesignGlycansProtocol.apply(), GlycomutagenesisProtocol.apply(), LoopHash_Analyze.apply(), TestJD2Mover.apply(), RDCScoreMover.apply(), LocalRmsd.apply(), PairDistance.apply(), PickBAB.apply(), Sasa.apply(), DeleteSegments.apply(), SetupHotspotMover.apply(), ElecDensMinPackMinMover.apply(), FloppyTailMover.apply(), ForgetMover.apply(), HECTMover.apply(), sasa_qdMover.apply(), UBQ_E2Mover.apply(), PepMinMover.apply(), IAMover.apply(), SymFixbbMover.apply(), XMLprinterMover.apply(), FoldTreeOutputter.apply(), HelicalPdbGeneratorMover.apply(), InterfaceStrandFinderMover.apply(), RDF_Mover.apply(), ChiMover.apply(), CycBBMover.apply(), MoveThenFixH.apply(), MoveThenFixHMin.apply(), LigChiMover.apply(), DuboisChiMover.apply(), BBMover.apply(), HolesTrainingDataMover.apply(), SymRBMover.apply(), SimpleBBMover.apply(), MySlideMover.apply(), MyTransMover.apply(), MyRotMover.apply(), FloatScRotMover.apply(), ScMinMover.apply(), apps::pilot::AlignChunkMover.apply(), apps::pilot::MultiTemplateAlignChunkMover.apply(), apps::pilot::CustomStarTreeMover.apply(), apps::pilot::CustomFragmentMover.apply(), apps::pilot::HelixMover.apply(), ChallengeMover.apply(), PBPotentialMover.apply(), apps::pilot::SampleSecondaryStructureAlignmentMover.apply(), SilentProlineFixMover.apply(), InterfaceDDGMover.apply(), A3BHbsCreatorMover.apply(), A3BHbsDockDesignMinimizeMover.apply(), HbsCreatorMover.apply(), A3BPeptideBuilder.apply(), CovalentPeptidomimeticDockDesign.apply(), CovalentPeptidomimeticCreator.apply(), B3AADihedralGrabber.apply(), MikeLinkerMover.apply(), TorsionVectorMover.apply(), TriazoleCreator.apply(), TrizaolamerDockDesignMinimizeMover.apply(), Packing_energies.apply(), SSM_energies.apply(), MyMover.apply(), JDmover.apply(), MyScoreMover.apply(), ComputeSAXSSpectrum.apply(), RescorePDDF.apply(), PrintPDDF.apply(), RescoreSAXS.apply(), FaSolReporter.apply(), MinTestMover.apply(), PerturbStruct.apply(), CrystHbondsReporter.apply(), LigandDockingHbondsReporter.apply(), SetupMover.apply(), JDtestmover.apply(), LDConverterMover.apply(), HotspotPlacementMover.apply(), LoopHashRelax_Sampler.apply(), protocols::moves::FragCaptureMover.apply(), Foldptn.apply(), MakeCanonicalHelix.apply(), SampleTiltProtocol.apply(), ColorByLipidType.apply(), FindOptimalHydrophobicThk.apply(), LigandRepackMinimizeProtocol.apply(), hackLAMMover.apply(), CalcsTestMover.apply(), MinPackMinMover.apply(), MinCenrotMover.apply(), CenRotRelaxMover.apply(), RosettaHolesMover.apply(), IdentifyCDRClusters.apply(), DockGlycansProtocol.apply(), GlycanClashCheckMover.apply(), APDBCMover.apply(), AnchorFinderMover.apply(), ExtractATD.apply(), HbsDesignMover.apply(), OopDesignMover.apply(), PeptoidDesignMover.apply(), MakeSegmentFileMPI.apply(), RNA_ScoreMover.apply(), ExposedStrandMover.apply(), HDdesignMover.apply(), HDmakerMover.apply(), CaToAllAtom.apply(), UBQ_GTPase_disulfide_Mover.apply(), BacksideHbondFinderMover.apply(), MetalSiteFinderMover.apply(), SeqBBTorSRFD.apply(), HemaggTrimer.apply(), MotifDock.apply(), CalcCdrRms.apply(), PackingAngle.apply(), FastThreadingMover.apply(), CloseContactWithResidue.apply(), protocols::antibody::task_operations::AddFrameworkProfilesOperation.apply(), Designer.apply(), SimulateCryoMover.apply(), TNM.apply(), DummyMover.apply(), OutputCenrotIntCoord.apply(), RepackCenrotMover.apply(), SmoothFragRepackMover.apply(), RescoreCenrot.apply(), RepackMinCenrotMover.apply(), ZincSiteEvaluator.apply(), CustomMover.apply(), DetectSymmetry.apply(), FragmentBasedDesign.apply(), SwapElementsMover1.apply(), SwapElementsMover2.apply(), MPFindInterfaceTestMover.apply(), MPframeworkTestMover.apply(), MPframeworkTest1Mover.apply(), ClosureMover.apply(), BreadthMover.apply(), MyApp.apply(), NativeEnsemble.apply(), Benchmark.apply(), RamaTestMover.apply(), ScTrials.apply(), HBondReporter.apply(), MotifScanMover.apply(), MembraneViewMover.apply(), MembraneMinMover.apply(), MembraneSfxnMover.apply(), MembraneDockingxMover.apply(), MembraneRelaxMover.apply(), MembraneSampleMover.apply(), MembraneTransformMover.apply(), BBG_Cyclic_Mover.apply(), MyProtocol.apply(), FloatScRandomChi.apply(), FloatScMonteCarlo.apply(), BUNS_Output.apply(), zinc1_homodimer_design.apply(), CrystDesign.apply(), CrystRelax.apply(), CrystCluster.apply(), CrystFFTDock.apply(), MPInterfaceStatistics.apply(), TestQuickRelaxMover.apply(), MPFoldingMover.apply(), LoadMembraneMover.apply(), ViewMembraneProteinMover.apply(), ClearPoseHeader.apply(), CenRotSidechainMover.apply(), CenRotCanonicalMover.apply(), CenRotRBRelaxMover.apply(), CenRotDockingMover.apply(), zinc2_homodimer_design.apply(), zinc2_homodimer_setup.apply(), MPDomainAssembly.apply(), Minimize.apply(), ExemplarMover.apply(), NCMinimize.apply(), Hit.apply(), myspace::Evaluator.apply(), StepwiseTorsionMover.apply(), ConcertedTorsionMover.apply(), protocols::moves::SimpleCstMover.apply(), BondedRNA_Mover.apply(), ZF_PatchupMover.apply(), MPScoreFunctionFingerprintMover.apply(), complex_interface_optimize.apply(), generate_hbond_geometry.apply(), ScoreFunctionFingerprintMover.apply(), compute_Irmsd.apply(), run_score_patchdock_hotspot.apply(), run_score_hotspot.apply(), protocols::abinitio::PcaEvaluator.apply(), protocols::abinitio::ShowViolation.apply(), protocols::abinitio::ComputeTotalDistCst.apply(), numeric::Quaternion< T >.apply(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase.apply(), test.T850_SubClassing.My_New_Mover.apply(), pyrosetta.distributed.tasks.rosetta_scripts.MultioutputRosettaScriptsTask.apply(), pyrosetta.distributed.tasks.rosetta_scripts.SingleoutputRosettaScriptsTask.apply(), test.Workshop9_my_shapes.PhiNByXDegreesMover.apply(), pyrosetta.distributed.viewer.modules.setBackgroundColor.apply(), pyrosetta.distributed.viewer.modules.setDisulfides.apply(), pyrosetta.distributed.viewer.modules.setHydrogenBonds.apply(), pyrosetta.distributed.viewer.modules.setHydrogens.apply(), pyrosetta.distributed.viewer.modules.setStyle.apply(), pyrosetta.distributed.viewer.modules.setSurface.apply(), pyrosetta.distributed.viewer.modules.setZoom.apply(), pyrosetta.distributed.viewer.modules.setZoomTo.apply(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase.custom_real_value_metric, pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.custom_real_value_metric, pyrosetta.bindings.scores.base.PoseCacheAccessorBase.custom_string_value_metric, pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.custom_string_value_metric, pyrosetta.tests.distributed.test_dask.format, PDB_IOBenchmark.pose, ScoreBenchmark.pose, ShearMoverBenchmark.pose, SmallMoverBenchmark.pose, SamplingManager.pose, apps::pilot::KicSandbox.pose, PoseAndData.pose, PoseWrap.pose, MatchBase.pose, MatchLig.pose, SlideTask.pose(), HIT.pose, WorkDat.pose, pyrosetta.bindings.pose.PoseResidueAccessor.pose, pyrosetta.bindings.pose.PoseResidueLabelAccessor.pose, pyrosetta.bindings.pose.PoseScoreAccessor.pose, pyrosetta.bindings.scores.base.PoseCacheAccessorBase.pose, ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget.pose(), pyrosetta.distributed.packed_pose.core.PackedPose.pose(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.pose, test.T010_LoadPDB.LoadPDBTest.pose, and test.T300_PyJobDistributor.TestPyJobDistributor.pose.

Referenced by pyrosetta.bindings.scores.core.PoseCacheAccessor.__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase.__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor.__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor.__delitem__(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._maybe_delete_reserved_keys_from_sm_data(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase.clear(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor.clear(), and pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor.clear().

_maybe_delete_reserved_keys_from_sm_data()

def pyrosetta.bindings.scores.base.PoseCacheAccessorBase._maybe_delete_reserved_keys_from_sm_data (   self )

private

`CustomRealValueMetric` and `CustomStringValueMetric` can save the extra default keys
"custom_real_valued_metric" or "custom_string_valued_metric" because `pose.cache.metrics`
does not set a 'custom_type' parameter when setting SimpleMetric data. This method
aims to delete these extra default keys if they were created and we can delete them.

References pyrosetta.bindings.scores.base.PoseCacheAccessorBase._has_reserved_custom_metric_keys(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._maybe_delete_keys_from_sm_data(), PDB_IOBenchmark.pose, ScoreBenchmark.pose, ShearMoverBenchmark.pose, SmallMoverBenchmark.pose, SamplingManager.pose, apps::pilot::KicSandbox.pose, PoseAndData.pose, PoseWrap.pose, MatchBase.pose, MatchLig.pose, SlideTask.pose(), HIT.pose, WorkDat.pose, pyrosetta.bindings.pose.PoseResidueAccessor.pose, pyrosetta.bindings.pose.PoseResidueLabelAccessor.pose, pyrosetta.bindings.pose.PoseScoreAccessor.pose, pyrosetta.bindings.scores.base.PoseCacheAccessorBase.pose, pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.pose, test.T010_LoadPDB.LoadPDBTest.pose, test.T300_PyJobDistributor.TestPyJobDistributor.pose, ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget.pose(), and pyrosetta.distributed.packed_pose.core.PackedPose.pose().

Referenced by pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase.__setitem__().

_repr_pretty_()

def pyrosetta.bindings.scores.base.PoseCacheAccessorBase._repr_pretty_ (   self,   p,   cycle  )

private

IPython-display representation.

_reserved()

def pyrosetta.bindings.scores.base.PoseCacheAccessorBase._reserved (   self )

private

Reserved scoretype keys that cannot be set or deleted.

References pyrosetta.bindings.scores.base.PoseCacheAccessorBase._reserved_custom_metric_keys().

Referenced by pyrosetta.bindings.pose.PoseScoreAccessor.__delitem__(), pyrosetta.bindings.pose.PoseScoreAccessor.__setitem__(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._validate_del(), and pyrosetta.bindings.scores.base.PoseCacheAccessorBase._validate_set().

_reserved_custom_metric_keys()

def pyrosetta.bindings.scores.base.PoseCacheAccessorBase._reserved_custom_metric_keys (   self )

private

Reserved scoretype keys for SimpleMetrics that cannot be set or deleted.

Referenced by pyrosetta.bindings.scores.base.PoseCacheAccessorBase._reserved().

_reserved_custom_metric_keys_warning()

def pyrosetta.bindings.scores.base.PoseCacheAccessorBase._reserved_custom_metric_keys_warning (   self )

private

Warn that reserved custom metric keys were added to the data cache.

References pyrosetta.bindings.scores.base.PoseCacheAccessorBase._has_reserved_custom_metric_keys().

Referenced by pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase.__setitem__().

_sm_data_accessor_attrs()

def pyrosetta.bindings.scores.base.PoseCacheAccessorBase._sm_data_accessor_attrs (   self )

private

Supported `SimpleMetricDataAccessor` attributes to reset after `clear_sm_data`.

Referenced by pyrosetta.bindings.scores.base.PoseCacheAccessorBase._maybe_delete_keys_from_sm_data().

_unsupported_sm_data_accessor_attrs()

def pyrosetta.bindings.scores.base.PoseCacheAccessorBase._unsupported_sm_data_accessor_attrs (   self )

private

Unsupported `SimpleMetricDataAccessor` attributes that cannot be reset after `clear_sm_data`.

Referenced by pyrosetta.bindings.scores.base.PoseCacheAccessorBase._maybe_delete_keys_from_sm_data().

_validate_del()

def pyrosetta.bindings.scores.base.PoseCacheAccessorBase._validate_del (   self,   key  )

private

Validate that a key can be deleted.

References pyrosetta.bindings.pose.PoseScoreAccessor._reserved, pyrosetta.bindings.scores.base.PoseCacheAccessorBase._reserved(), and pyrosetta.tests.distributed.test_dask.format.

Referenced by pyrosetta.bindings.scores.core.PoseCacheAccessor.__delitem__(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase.__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase.__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor.__delitem__(), and pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor.__delitem__().

_validate_set()

def pyrosetta.bindings.scores.base.PoseCacheAccessorBase._validate_set (   self,   key  )

private

Validate that a key can be set.

References pyrosetta.bindings.pose.PoseScoreAccessor._reserved, pyrosetta.bindings.scores.base.PoseCacheAccessorBase._reserved(), and pyrosetta.tests.distributed.test_dask.format.

Referenced by pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase.__setitem__(), and pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase.__setitem__().

apply()

def pyrosetta.bindings.scores.base.PoseCacheAccessorBase.apply	(		self,
			metric,
			key,
			value
	)

Apply a SimpleMetric with a key/value pair to the pose.

References pyrosetta.bindings.scores.serialization.PoseScoreSerializer.maybe_encode(), PDB_IOBenchmark.pose, ScoreBenchmark.pose, ShearMoverBenchmark.pose, SmallMoverBenchmark.pose, SamplingManager.pose, apps::pilot::KicSandbox.pose, PoseAndData.pose, PoseWrap.pose, MatchBase.pose, MatchLig.pose, SlideTask.pose(), HIT.pose, WorkDat.pose, pyrosetta.bindings.pose.PoseResidueAccessor.pose, pyrosetta.bindings.pose.PoseResidueLabelAccessor.pose, pyrosetta.bindings.pose.PoseScoreAccessor.pose, pyrosetta.bindings.scores.base.PoseCacheAccessorBase.pose, ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget.pose(), pyrosetta.distributed.packed_pose.core.PackedPose.pose(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.pose, test.T010_LoadPDB.LoadPDBTest.pose, and test.T300_PyJobDistributor.TestPyJobDistributor.pose.

Referenced by pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase.__setitem__(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._maybe_delete_keys_from_sm_data(), and pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask.execute().

Member Data Documentation

__slots__

tuple pyrosetta.bindings.scores.base.PoseCacheAccessorBase.__slots__ = ("pose",)

staticprivate

Referenced by pyrosetta.distributed.cluster.io.IO._get_instance_and_metadata().

custom_real_value_metric

pyrosetta.bindings.scores.base.PoseCacheAccessorBase.custom_real_value_metric

Referenced by pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase.__setitem__(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._maybe_delete_keys_from_sm_data(), and pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.test_pose_cache().

custom_string_value_metric

pyrosetta.bindings.scores.base.PoseCacheAccessorBase.custom_string_value_metric

Referenced by pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase.__setitem__(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._maybe_delete_keys_from_sm_data(), and pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.test_pose_cache().

pose

pyrosetta.bindings.scores.base.PoseCacheAccessorBase.pose

Referenced by pyrosetta.bindings.pose.PoseScoreAccessor.__delitem__(), pyrosetta.bindings.scores.core.PoseCacheAccessor.__delitem__(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase.__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase.__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor.__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor.__delitem__(), pyrosetta.bindings.pose.PoseResidueAccessor.__getitem__(), pyrosetta.bindings.pose.PoseResidueLabelAccessor.__getitem__(), pyrosetta.bindings.pose.PoseResidueAccessor.__iadd__(), pyrosetta.bindings.pose.PoseResidueAccessor.__imul__(), pyrosetta.bindings.pose.PoseResidueAccessor.__iter__(), pyrosetta.bindings.pose.PoseResidueAccessor.__len__(), pyrosetta.bindings.pose.PoseResidueLabelAccessor.__len__(), pyrosetta.bindings.pose.PoseResidueLabelAccessor.__repr__(), pyrosetta.bindings.pose.PoseResidueAccessor.__reversed__(), pyrosetta.bindings.pose.PoseScoreAccessor.__setitem__(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase.__setitem__(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._get_sm_data_dict(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._has_reserved_custom_metric_keys(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._maybe_delete_keys_from_sm_data(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._maybe_delete_reserved_keys_from_sm_data(), pyrosetta.bindings.pose.PoseScoreAccessor.all(), pyrosetta.bindings.scores.energies.EnergiesAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraFloatScoresDataAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraStringScoresDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueProbabilitiesDataAccessor.all(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase.apply(), pyrosetta.bindings.pose.PoseScoreAccessor.clear(), pyrosetta.bindings.scores.core.PoseCacheAccessor.clear(), pyrosetta.bindings.scores.energies.EnergiesAccessor.clear(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase.clear(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor.clear(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.clear(), pyrosetta.distributed.packed_pose.core.PackedPose.clone(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.composite_real(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.composite_string(), pyrosetta.distributed.packed_pose.core.PackedPose.empty(), pyrosetta.bindings.pose.PoseScoreAccessor.energies(), pyrosetta.bindings.scores.core.PoseCacheAccessor.energies(), pyrosetta.bindings.pose.PoseScoreAccessor.extra(), pyrosetta.bindings.scores.core.PoseCacheAccessor.extra(), pyrosetta.bindings.scores.core.PoseCacheAccessor.metrics(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.per_residue_probabilities(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.per_residue_real(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.per_residue_string(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor.real(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.real(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor.string(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.string(), test.T300_PyJobDistributor.TestPyJobDistributor.test_jd(), test.T300_PyJobDistributor.TestPyJobDistributor.test_jd_at(), test.T300_PyJobDistributor.TestPyJobDistributor.test_jd_serializable_scores(), test.T300_PyJobDistributor.TestPyJobDistributor.test_jd_unserializable_scores(), test.T010_LoadPDB.LoadPDBTest.test_pdbstring_io(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.test_pose_cache(), test.T010_LoadPDB.LoadPDBTest.test_roundtrip_file(), test.T010_LoadPDB.LoadPDBTest.test_roundtrip_pdb(), test.T010_LoadPDB.LoadPDBTest.test_roundtrip_scored_pdb(), and pyrosetta.distributed.packed_pose.core.PackedPose.update_scores().

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The documentation for this class was generated from the following file:

• src/python/PyRosetta/src/pyrosetta/bindings/scores/base.py