basic::options::OptionKeys::templates Namespace Reference

Namespaces
	cst
	fragsteal

Variables
BooleanOptionKey const	templates
FileOptionKey const	config
BooleanOptionKey const	fix_aligned_residues
FileOptionKey const	fix_frag_file
IntegerOptionKey const	fix_margin
IntegerOptionKey const	min_nr_large_frags
IntegerOptionKey const	min_nr_small_frags
BooleanOptionKey const	no_pick_fragments
IntegerOptionKey const	nr_large_copies
IntegerOptionKey const	nr_small_copies
BooleanOptionKey const	pairings
BooleanOptionKey const	pick_multiple_sizes
BooleanOptionKey const	strand_constraint
BooleanOptionKey const	vary_frag_size
BooleanOptionKey const	no_culling
FileOptionKey const	helix_pairings
FileOptionKey const	prefix
IntegerOptionKey const	change_movemap
BooleanOptionKey const	force_native_topology
RealOptionKey const	topology_rank_cutoff
IntegerOptionKey const	min_frag_size
IntegerOptionKey const	max_shrink
IntegerOptionKey const	shrink_step
IntegerOptionKey const	shrink_pos_step
IntegerOptionKey const	min_padding
IntegerOptionKey const	min_align_pos
IntegerOptionKey const	max_align_pos

Variable Documentation

change_movemap

IntegerOptionKey const basic::options::OptionKeys::templates::change_movemap

extern

config

FileOptionKey const basic::options::OptionKeys::templates::config

extern

fix_aligned_residues

BooleanOptionKey const basic::options::OptionKeys::templates::fix_aligned_residues

extern

fix_frag_file

FileOptionKey const basic::options::OptionKeys::templates::fix_frag_file

extern

fix_margin

IntegerOptionKey const basic::options::OptionKeys::templates::fix_margin

extern

Referenced by protocols::abinitio::JumpSpecificAbrelax::insert_template_frags().

force_native_topology

BooleanOptionKey const basic::options::OptionKeys::templates::force_native_topology

extern

helix_pairings

FileOptionKey const basic::options::OptionKeys::templates::helix_pairings

extern

Referenced by protocols::abinitio::JumpSpecificAbrelax::setup_jumps().

max_align_pos

IntegerOptionKey const basic::options::OptionKeys::templates::max_align_pos

extern

max_shrink

IntegerOptionKey const basic::options::OptionKeys::templates::max_shrink

extern

min_align_pos

IntegerOptionKey const basic::options::OptionKeys::templates::min_align_pos

extern

min_frag_size

IntegerOptionKey const basic::options::OptionKeys::templates::min_frag_size

extern

min_nr_large_frags

IntegerOptionKey const basic::options::OptionKeys::templates::min_nr_large_frags

extern

min_nr_small_frags

IntegerOptionKey const basic::options::OptionKeys::templates::min_nr_small_frags

extern

min_padding

IntegerOptionKey const basic::options::OptionKeys::templates::min_padding

extern

no_culling

BooleanOptionKey const basic::options::OptionKeys::templates::no_culling

extern

no_pick_fragments

BooleanOptionKey const basic::options::OptionKeys::templates::no_pick_fragments

extern

nr_large_copies

IntegerOptionKey const basic::options::OptionKeys::templates::nr_large_copies

extern

nr_small_copies

IntegerOptionKey const basic::options::OptionKeys::templates::nr_small_copies

extern

Referenced by protocols::abinitio::JumpSpecificAbrelax::setup_fragments().

pairings

BooleanOptionKey const basic::options::OptionKeys::templates::pairings

extern

Referenced by dsRNA_grow::apply(), dsRNA_grow::constrain_and_minimize(), rna_fullatom_minimize_test(), and protocols::abinitio::JumpSpecificAbrelax::setup_jumps().

pick_multiple_sizes

BooleanOptionKey const basic::options::OptionKeys::templates::pick_multiple_sizes

extern

prefix

FileOptionKey const basic::options::OptionKeys::templates::prefix

extern

shrink_pos_step

IntegerOptionKey const basic::options::OptionKeys::templates::shrink_pos_step

extern

shrink_step

IntegerOptionKey const basic::options::OptionKeys::templates::shrink_step

extern

strand_constraint

BooleanOptionKey const basic::options::OptionKeys::templates::strand_constraint

extern

templates

BooleanOptionKey const basic::options::OptionKeys::templates::templates

extern

topology_rank_cutoff

RealOptionKey const basic::options::OptionKeys::templates::topology_rank_cutoff

extern

vary_frag_size

BooleanOptionKey const basic::options::OptionKeys::templates::vary_frag_size

extern