pyrosetta.bindings.pose.PoseResidueLabelAccessor Class Reference

Inheritance diagram for pyrosetta.bindings.pose.PoseResidueLabelAccessor:

Public Member Functions
def	mask (self)
def	__init__ (self, pose)
def	__len__ (self)
def	__iter__ (self)
def	__reversed__ (self)
def	__getitem__ (self, key)
def	__str__ (self)
def	__repr__ (self)

Public Attributes
	pose

Private Member Functions
def	_repr_pretty_ (self, p, cycle)

Static Private Attributes
tuple	__slots__ = ("pose",)

Detailed Description

Accessor wrapper for a pose's residue labels as a 1-indexed-collection of sets.

Constructor & Destructor Documentation

__init__()

def pyrosetta.bindings.pose.PoseResidueLabelAccessor.__init__	(		self,
			pose
	)

Referenced by pyrosetta.distributed.tasks.taskbase.TaskBase.__setstate__().

Member Function Documentation

__getitem__()

def pyrosetta.bindings.pose.PoseResidueLabelAccessor.__getitem__	(		self,
			key
	)

1-based index and slice over residue labels.

References ObjexxFCL.len(), create_a3b_hbs.pdb_info, PDB_IOBenchmark.pose, ScoreBenchmark.pose, ShearMoverBenchmark.pose, SmallMoverBenchmark.pose, SamplingManager.pose, apps::pilot::KicSandbox.pose, PoseAndData.pose, PoseWrap.pose, MatchBase.pose, MatchLig.pose, SlideTask.pose(), HIT.pose, WorkDat.pose, pyrosetta.bindings.pose.PoseResidueAccessor.pose, pyrosetta.bindings.pose.PoseResidueLabelAccessor.pose, pyrosetta.bindings.pose.PoseScoreAccessor.pose, pyrosetta.bindings.scores.base.PoseCacheAccessorBase.pose, pyrosetta.distributed.packed_pose.core.PackedPose.pose(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.pose, test.T010_LoadPDB.LoadPDBTest.pose, test.T300_PyJobDistributor.TestPyJobDistributor.pose, ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget.pose(), range, and pyrosetta.bindings.utility.slice_1base_indicies().

__iter__()

def pyrosetta.bindings.pose.PoseResidueLabelAccessor.__iter__

(

self

)

References ObjexxFCL.len(), and range.

__len__()

def pyrosetta.bindings.pose.PoseResidueLabelAccessor.__len__

(

self

)

References create_a3b_hbs.nres, create_a3b_hbs.pdb_info, PDB_IOBenchmark.pose, ScoreBenchmark.pose, ShearMoverBenchmark.pose, SmallMoverBenchmark.pose, SamplingManager.pose, apps::pilot::KicSandbox.pose, PoseAndData.pose, PoseWrap.pose, MatchBase.pose, MatchLig.pose, SlideTask.pose(), HIT.pose, WorkDat.pose, pyrosetta.bindings.pose.PoseResidueAccessor.pose, pyrosetta.bindings.pose.PoseResidueLabelAccessor.pose, pyrosetta.bindings.pose.PoseScoreAccessor.pose, pyrosetta.bindings.scores.base.PoseCacheAccessorBase.pose, ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget.pose(), pyrosetta.distributed.packed_pose.core.PackedPose.pose(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.pose, test.T010_LoadPDB.LoadPDBTest.pose, and test.T300_PyJobDistributor.TestPyJobDistributor.pose.

__repr__()

def pyrosetta.bindings.pose.PoseResidueLabelAccessor.__repr__

(

self

)

References PDB_IOBenchmark.pose, ScoreBenchmark.pose, ShearMoverBenchmark.pose, SmallMoverBenchmark.pose, SamplingManager.pose, apps::pilot::KicSandbox.pose, PoseAndData.pose, PoseWrap.pose, MatchBase.pose, MatchLig.pose, SlideTask.pose(), HIT.pose, WorkDat.pose, pyrosetta.bindings.pose.PoseResidueAccessor.pose, pyrosetta.bindings.pose.PoseResidueLabelAccessor.pose, pyrosetta.bindings.pose.PoseScoreAccessor.pose, pyrosetta.bindings.scores.base.PoseCacheAccessorBase.pose, ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget.pose(), pyrosetta.distributed.packed_pose.core.PackedPose.pose(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.pose, test.T010_LoadPDB.LoadPDBTest.pose, and test.T300_PyJobDistributor.TestPyJobDistributor.pose.

Referenced by pyrosetta.distributed.tasks.taskbase.TaskBase.__name__().

__reversed__()

def pyrosetta.bindings.pose.PoseResidueLabelAccessor.__reversed__

(

self

)

References ObjexxFCL.len(), and range.

__str__()

def pyrosetta.bindings.pose.PoseResidueLabelAccessor.__str__

(

self

)

References basic::options::OptionKeys::in::file.list.

_repr_pretty_()

def pyrosetta.bindings.pose.PoseResidueLabelAccessor._repr_pretty_ (   self,   p,   cycle  )

private

IPython-display representation.

References basic::options::OptionKeys::in::file.list.

mask()

def pyrosetta.bindings.pose.PoseResidueLabelAccessor.mask

(

self

)

Member Data Documentation

__slots__

tuple pyrosetta.bindings.pose.PoseResidueLabelAccessor.__slots__ = ("pose",)

staticprivate

Referenced by pyrosetta.distributed.cluster.io.IO._get_instance_and_metadata().

pose

pyrosetta.bindings.pose.PoseResidueLabelAccessor.pose

Referenced by pyrosetta.bindings.pose.PoseScoreAccessor.__delitem__(), pyrosetta.bindings.scores.core.PoseCacheAccessor.__delitem__(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase.__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase.__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor.__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor.__delitem__(), pyrosetta.bindings.pose.PoseResidueAccessor.__getitem__(), pyrosetta.bindings.pose.PoseResidueLabelAccessor.__getitem__(), pyrosetta.bindings.pose.PoseResidueAccessor.__iadd__(), pyrosetta.bindings.pose.PoseResidueAccessor.__imul__(), pyrosetta.bindings.pose.PoseResidueAccessor.__iter__(), pyrosetta.bindings.pose.PoseResidueAccessor.__len__(), pyrosetta.bindings.pose.PoseResidueLabelAccessor.__len__(), pyrosetta.bindings.pose.PoseResidueLabelAccessor.__repr__(), pyrosetta.bindings.pose.PoseResidueAccessor.__reversed__(), pyrosetta.bindings.pose.PoseScoreAccessor.__setitem__(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase.__setitem__(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._get_sm_data_dict(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._has_reserved_custom_metric_keys(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._maybe_delete_keys_from_sm_data(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._maybe_delete_reserved_keys_from_sm_data(), pyrosetta.bindings.pose.PoseScoreAccessor.all(), pyrosetta.bindings.scores.energies.EnergiesAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraFloatScoresDataAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraStringScoresDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueProbabilitiesDataAccessor.all(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase.apply(), pyrosetta.bindings.pose.PoseScoreAccessor.clear(), pyrosetta.bindings.scores.core.PoseCacheAccessor.clear(), pyrosetta.bindings.scores.energies.EnergiesAccessor.clear(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase.clear(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor.clear(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.clear(), pyrosetta.distributed.packed_pose.core.PackedPose.clone(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.composite_real(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.composite_string(), pyrosetta.distributed.packed_pose.core.PackedPose.empty(), pyrosetta.bindings.pose.PoseScoreAccessor.energies(), pyrosetta.bindings.scores.core.PoseCacheAccessor.energies(), pyrosetta.bindings.pose.PoseScoreAccessor.extra(), pyrosetta.bindings.scores.core.PoseCacheAccessor.extra(), pyrosetta.bindings.scores.core.PoseCacheAccessor.metrics(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.per_residue_probabilities(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.per_residue_real(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.per_residue_string(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor.real(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.real(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor.string(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.string(), test.T300_PyJobDistributor.TestPyJobDistributor.test_jd(), test.T300_PyJobDistributor.TestPyJobDistributor.test_jd_at(), test.T300_PyJobDistributor.TestPyJobDistributor.test_jd_serializable_scores(), test.T300_PyJobDistributor.TestPyJobDistributor.test_jd_unserializable_scores(), test.T010_LoadPDB.LoadPDBTest.test_pdbstring_io(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.test_pose_cache(), test.T010_LoadPDB.LoadPDBTest.test_roundtrip_file(), test.T010_LoadPDB.LoadPDBTest.test_roundtrip_pdb(), test.T010_LoadPDB.LoadPDBTest.test_roundtrip_scored_pdb(), and pyrosetta.distributed.packed_pose.core.PackedPose.update_scores().

---

The documentation for this class was generated from the following file:

• src/python/PyRosetta/src/pyrosetta/bindings/pose.py