basic::options::OptionKeys::cm Namespace Reference

Namespaces
	hybridize
	sanitize

Variables
BooleanOptionKey const	cm
BooleanOptionKey const	start_models_only
StringOptionKey const	aln_format
BooleanOptionKey const	recover_side_chains
FileVectorOptionKey const	steal_extra_residues
StringOptionKey const	loop_mover
IntegerOptionKey const	loop_close_level
IntegerOptionKey const	min_loop_size
IntegerOptionKey const	max_loop_rebuild
RealOptionKey const	loop_rebuild_filter
RealOptionKey const	aln_length_filter_quantile
IntegerOptionKey const	aln_length_filter
StringVectorOptionKey const	seq_score
StringOptionKey const	aligner
RealOptionKey const	min_gap_open
RealOptionKey const	max_gap_open
RealOptionKey const	min_gap_extend
RealOptionKey const	max_gap_extend
IntegerOptionKey const	nn
FileVectorOptionKey const	ev_map
FileVectorOptionKey const	hh_map
IntegerVectorOptionKey const	seeds
IntegerOptionKey const	nremain_reset
RealVectorOptionKey const	quota_per_silent
RealOptionKey const	similarity_cut
RealOptionKey const	similarity_limit
RealOptionKey const	refsimilarity_cut

Variable Documentation

aligner

StringOptionKey const basic::options::OptionKeys::cm::aligner

extern

Referenced by main().

aln_format

StringOptionKey const basic::options::OptionKeys::cm::aln_format

extern

Referenced by main().

aln_length_filter

IntegerOptionKey const basic::options::OptionKeys::cm::aln_length_filter

extern

aln_length_filter_quantile

RealOptionKey const basic::options::OptionKeys::cm::aln_length_filter_quantile

extern

cm

BooleanOptionKey const basic::options::OptionKeys::cm::cm

extern

Referenced by LDConverterMover::apply(), main(), and processRegions().

ev_map

FileVectorOptionKey const basic::options::OptionKeys::cm::ev_map

extern

hh_map

FileVectorOptionKey const basic::options::OptionKeys::cm::hh_map

extern

loop_close_level

IntegerOptionKey const basic::options::OptionKeys::cm::loop_close_level

extern

loop_mover

StringOptionKey const basic::options::OptionKeys::cm::loop_mover

extern

loop_rebuild_filter

RealOptionKey const basic::options::OptionKeys::cm::loop_rebuild_filter

extern

max_gap_extend

RealOptionKey const basic::options::OptionKeys::cm::max_gap_extend

extern

Referenced by main().

max_gap_open

RealOptionKey const basic::options::OptionKeys::cm::max_gap_open

extern

Referenced by main().

max_loop_rebuild

IntegerOptionKey const basic::options::OptionKeys::cm::max_loop_rebuild

extern

min_gap_extend

RealOptionKey const basic::options::OptionKeys::cm::min_gap_extend

extern

Referenced by main().

min_gap_open

RealOptionKey const basic::options::OptionKeys::cm::min_gap_open

extern

Referenced by main().

min_loop_size

IntegerOptionKey const basic::options::OptionKeys::cm::min_loop_size

extern

Referenced by main(), and trim_back_t033_pose().

nn

IntegerOptionKey const basic::options::OptionKeys::cm::nn

extern

Referenced by dna_stats(), find_dna_rotamers(), intra_dna_stats(), kono_sarai_stats(), kono_sarai_zscore(), main(), phosphate_stats(), printbits(), numeric::linear_algebra::qzval(), numeric::linear_algebra::qzvec(), core::pack::annealer::FixbbSimAnnealer::run(), sample_rna_dofs_new(), save_cluster_tree_lite(), simple_loop_modeling_test(), spec_test(), and trim_dock_rebuild_relax_test().

nremain_reset

IntegerOptionKey const basic::options::OptionKeys::cm::nremain_reset

extern

Referenced by main().

quota_per_silent

RealVectorOptionKey const basic::options::OptionKeys::cm::quota_per_silent

extern

Referenced by get_quota_per_silent().

recover_side_chains

BooleanOptionKey const basic::options::OptionKeys::cm::recover_side_chains

extern

refsimilarity_cut

RealOptionKey const basic::options::OptionKeys::cm::refsimilarity_cut

extern

Referenced by main().

seeds

IntegerVectorOptionKey const basic::options::OptionKeys::cm::seeds

extern

Referenced by main().

seq_score

StringVectorOptionKey const basic::options::OptionKeys::cm::seq_score

extern

Referenced by main().

similarity_cut

RealOptionKey const basic::options::OptionKeys::cm::similarity_cut

extern

Referenced by main().

similarity_limit

RealOptionKey const basic::options::OptionKeys::cm::similarity_limit

extern

start_models_only

BooleanOptionKey const basic::options::OptionKeys::cm::start_models_only

extern

steal_extra_residues

FileVectorOptionKey const basic::options::OptionKeys::cm::steal_extra_residues

extern