basic::options::OptionKeys::rna::denovo::minimize Namespace Reference

Variables
BooleanOptionKey const	minimize
IntegerOptionKey const	minimize_rounds
BooleanOptionKey const	skip_coord_constraints
BooleanOptionKey const	skip_o2prime_trials
BooleanOptionKey const	deriv_check
BooleanOptionKey const	minimizer_use_coordinate_constraints
StringOptionKey const	min_type
BooleanOptionKey const	minimize_bps
BooleanOptionKey const	minimize_all_protein
BooleanOptionKey const	minimize_protein_sc
BooleanOptionKey const	protein_packing
BooleanOptionKey const	protein_pack_all
RealOptionKey const	protein_packing_distance
ResidueChainVectorOptionKey const	extra_minimize_res
ResidueChainVectorOptionKey const	extra_minimize_chi_res
BooleanOptionKey const	minimize_use_nblist
BooleanOptionKey const	minimize_nblist_auto_update
IntegerOptionKey const	minimize_max_iter

Variable Documentation

deriv_check

BooleanOptionKey const basic::options::OptionKeys::rna::denovo::minimize::deriv_check

extern

Referenced by hard_minimize(), juke_sam_test(), main(), minimize_test(), minimizer_test(), pack_phosphates(), rebuild_test(), and run_test().

extra_minimize_chi_res

ResidueChainVectorOptionKey const basic::options::OptionKeys::rna::denovo::minimize::extra_minimize_chi_res

extern

extra_minimize_res

ResidueChainVectorOptionKey const basic::options::OptionKeys::rna::denovo::minimize::extra_minimize_res

extern

min_type

StringOptionKey const basic::options::OptionKeys::rna::denovo::minimize::min_type

extern

minimize

BooleanOptionKey const basic::options::OptionKeys::rna::denovo::minimize::minimize

extern

minimize_all_protein

BooleanOptionKey const basic::options::OptionKeys::rna::denovo::minimize::minimize_all_protein

extern

minimize_bps

BooleanOptionKey const basic::options::OptionKeys::rna::denovo::minimize::minimize_bps

extern

minimize_max_iter

IntegerOptionKey const basic::options::OptionKeys::rna::denovo::minimize::minimize_max_iter

extern

minimize_nblist_auto_update

BooleanOptionKey const basic::options::OptionKeys::rna::denovo::minimize::minimize_nblist_auto_update

extern

Referenced by main().

minimize_protein_sc

BooleanOptionKey const basic::options::OptionKeys::rna::denovo::minimize::minimize_protein_sc

extern

minimize_rounds

IntegerOptionKey const basic::options::OptionKeys::rna::denovo::minimize::minimize_rounds

extern

minimize_use_nblist

BooleanOptionKey const basic::options::OptionKeys::rna::denovo::minimize::minimize_use_nblist

extern

Referenced by main().

minimizer_use_coordinate_constraints

BooleanOptionKey const basic::options::OptionKeys::rna::denovo::minimize::minimizer_use_coordinate_constraints

extern

protein_pack_all

BooleanOptionKey const basic::options::OptionKeys::rna::denovo::minimize::protein_pack_all

extern

protein_packing

BooleanOptionKey const basic::options::OptionKeys::rna::denovo::minimize::protein_packing

extern

protein_packing_distance

RealOptionKey const basic::options::OptionKeys::rna::denovo::minimize::protein_packing_distance

extern

skip_coord_constraints

BooleanOptionKey const basic::options::OptionKeys::rna::denovo::minimize::skip_coord_constraints

extern

Referenced by main(), and pack_phosphates().

skip_o2prime_trials

BooleanOptionKey const basic::options::OptionKeys::rna::denovo::minimize::skip_o2prime_trials

extern

Referenced by main(), and pack_phosphates().