protocols::jd2::RECONMPIJobDistributor Class Reference

Inheritance diagram for protocols::jd2::RECONMPIJobDistributor:

Public Member Functions
core::Size	get_new_job_id ()
protocols::jd2::JobOP	current_job () const
void	mark_current_job_id_for_repetition ()
void	job_failed (core::pose::Pose &, bool)
void	handle_interrupt ()
utility::vector1< core::scoring::constraints::ConstraintCOP >	apply_linking_constraints (core::pose::PoseOP &pose, utility::vector1< std::string > other_pose_sequences, core::Real constraint_weight)
bool	design_this_nodes_pose (core::pose::PoseOP &pose, std::string &this_nodes_resfile, core::Real constraint_weight)
void	pick_consensus_AA (core::pose::PoseOP &this_nodes_pose, std::string my_sequence, utility::vector1< std::string > other_pose_sequences, core::Size zero_index)
bool	find_consensus_sequence (core::pose::PoseOP &this_nodes_pose)
void	go_hardcoded (protocols::moves::MoverOP)
bool	apply_parsed_protocol (core::pose::PoseOP &pose, protocols::rosetta_scripts::ParsedProtocolOP &protocol)
void	go (protocols::moves::MoverOP mover)

Private Attributes
protocols::jd2::JobOP	this_nodes_job_
core::Size	number_jobs_
std::map< core::Size, protocols::jd2::Jobs >	job_map_
core::Size	current_nstruct_
utility::vector1< core::Size >	my_designable_residues_
protocols::simple_moves::PackRotamersMoverOP	packer_
core::scoring::ScoreFunctionOP	sfxn_

Member Function Documentation

apply_linking_constraints()

utility::vector1< core::scoring::constraints::ConstraintCOP > protocols::jd2::RECONMPIJobDistributor::apply_linking_constraints ( core::pose::PoseOP &  pose, utility::vector1< std::string >  other_pose_sequences, core::Real  constraint_weight  )

inline

References local::constraint_weight, basic::options::OptionKeys::constraints::constraints, create_a3b_hbs::ii, beta_nonlocal::jj, my_designable_residues_, beta_nonlocal::pose, and TR.

Referenced by design_this_nodes_pose().

apply_parsed_protocol()

bool protocols::jd2::RECONMPIJobDistributor::apply_parsed_protocol ( core::pose::PoseOP &  pose, protocols::rosetta_scripts::ParsedProtocolOP &  protocol  )

inline

References beta_nonlocal::pose, basic::options::OptionKeys::docking::ligand::protocol, and TR.

Referenced by go().

current_job()

protocols::jd2::JobOP protocols::jd2::RECONMPIJobDistributor::current_job ( ) const

inline

References this_nodes_job_.

design_this_nodes_pose()

bool protocols::jd2::RECONMPIJobDistributor::design_this_nodes_pose ( core::pose::PoseOP &  pose, std::string &  this_nodes_resfile, core::Real  constraint_weight  )

inline

References apply_linking_constraints(), local::constraint_weight, pyrosetta.distributed.io::get_score_function(), create_a3b_hbs::i, utility::mpi_rank(), my_designable_residues_, number_jobs_, packer_, demo.D050_Packer_task::packer_task(), parse_resfile(), beta_nonlocal::pose, utility::receive_integer_from_node(), utility::receive_string_from_node(), utility::send_integer_to_node(), utility::send_string_to_node(), sfxn_, vancomycin::task, TR, and utility_exit_with_message.

Referenced by go_hardcoded().

find_consensus_sequence()

bool protocols::jd2::RECONMPIJobDistributor::find_consensus_sequence ( core::pose::PoseOP &  this_nodes_pose )

inline

References erraser_analysis::diff, create_a3b_hbs::i, create_a3b_hbs::j, utility::mpi_rank(), my_designable_residues_, number_jobs_, pick_consensus_AA(), utility::receive_string_from_node(), and utility::send_string_to_node().

Referenced by go_hardcoded().

get_new_job_id()

core::Size protocols::jd2::RECONMPIJobDistributor::get_new_job_id ( )

inline

References current_nstruct_, and utility::mpi_rank().

go()

void protocols::jd2::RECONMPIJobDistributor::go ( protocols::moves::MoverOP  mover )

inline

References apply_parsed_protocol(), current_nstruct_, basic::Tracer::Error, create_a3b_hbs::i, job_map_, demo.D060_Folding::jobs, utility::mpi_nprocs(), utility::mpi_rank(), basic::options::OptionKeys::backrub::ntrials, basic::options::OptionKeys::jd2::ntrials, number_jobs_, basic::options::option, option, enumerate_junctions::parser, parser::protocol(), basic::options::OptionKeys::legacy_sewing::rank, pyrosetta.bindings.warnings::setPoseExtraScore(), this_nodes_job_, TR, basic::options::OptionKeys::inout::dbms::user, and utility_exit_with_message.

Referenced by main().

go_hardcoded()

void protocols::jd2::RECONMPIJobDistributor::go_hardcoded ( protocols::moves::MoverOP  )

inline

References current_nstruct_, design_this_nodes_pose(), find_consensus_sequence(), create_a3b_hbs::i, job_map_, demo.D060_Folding::jobs, utility::mpi_nprocs(), utility::mpi_rank(), number_jobs_, option, basic::options::OptionKeys::legacy_sewing::rank, utility::receive_string_from_node(), packing::resfile(), utility::send_string_to_node(), pyrosetta.bindings.warnings::setPoseExtraScore(), this_nodes_job_, TR, and utility_exit_with_message.

handle_interrupt()

void protocols::jd2::RECONMPIJobDistributor::handle_interrupt ( )

inline

job_failed()

void protocols::jd2::RECONMPIJobDistributor::job_failed ( core::pose::Pose &  , bool    )

inline

mark_current_job_id_for_repetition()

void protocols::jd2::RECONMPIJobDistributor::mark_current_job_id_for_repetition ( )

inline

pick_consensus_AA()

void protocols::jd2::RECONMPIJobDistributor::pick_consensus_AA ( core::pose::PoseOP &  this_nodes_pose, std::string  my_sequence, utility::vector1< std::string >  other_pose_sequences, core::Size  zero_index  )

inline

References begin, end, detail::find(), pyrosetta.distributed.io::get_score_function(), create_a3b_hbs::ii, utility::vector1< T, A >::index(), beta_nonlocal::jj, utility::mpi_rank(), my_designable_residues_, number_jobs_, utility::receive_double_from_node(), utility::receive_string_from_node(), utility::send_double_to_node(), utility::send_string_to_node(), test.T120_core::sfxn, and vancomycin::task.

Referenced by find_consensus_sequence().

Member Data Documentation

current_nstruct_

core::Size protocols::jd2::RECONMPIJobDistributor::current_nstruct_

private

Referenced by get_new_job_id(), go(), and go_hardcoded().

job_map_

std::map<core::Size, protocols::jd2::Jobs> protocols::jd2::RECONMPIJobDistributor::job_map_

private

Referenced by go(), and go_hardcoded().

my_designable_residues_

utility::vector1< core::Size > protocols::jd2::RECONMPIJobDistributor::my_designable_residues_

private

Referenced by apply_linking_constraints(), design_this_nodes_pose(), find_consensus_sequence(), and pick_consensus_AA().

number_jobs_

core::Size protocols::jd2::RECONMPIJobDistributor::number_jobs_

private

Referenced by design_this_nodes_pose(), find_consensus_sequence(), go(), go_hardcoded(), and pick_consensus_AA().

packer_

protocols::simple_moves::PackRotamersMoverOP protocols::jd2::RECONMPIJobDistributor::packer_

private

Referenced by design_this_nodes_pose().

sfxn_

core::scoring::ScoreFunctionOP protocols::jd2::RECONMPIJobDistributor::sfxn_

private

Referenced by design_this_nodes_pose().

this_nodes_job_

protocols::jd2::JobOP protocols::jd2::RECONMPIJobDistributor::this_nodes_job_

private

Referenced by current_job(), go(), and go_hardcoded().

---

The documentation for this class was generated from the following file:

• src/apps/pilot/sevya/recon_mpi.cc