Referenced by SSM_energies::apply(), MinTestMover::apply(), cleanup_dna_chains(), compare_dna_energies(), compare_energies(), contact_model_prediction(), design_test(), dna_chain_check(), dna_coupled_rotamer_design_test(), dna_deriv_test(), dna_deriv_test_old(), dna_design_test_old(), dna_stats(), find_dna_rotamers(), intra_dna_stats(), kono_sarai_stats(), kono_sarai_zscore(), luxr_setup(), luxr_test(), main(), not1_test(), phosphate_stats(), setup_zf_pose(), show_pairing_info(), spec_test(), tf_specificity_test(), zf_relax_test(), zf_test(), and zif268_test().
