pyrosetta.distributed.viewer.modules.setHydrogens Class Reference

Public Member Functions
def	__init__ (self, color="white", radius=0.05, polar_only=False)
def	apply (self, viewer, pose, pdbstring)

Public Attributes
	color
	radius
	polar_only

Detailed Description

Show all or only polar hydrogen atoms in each initialized `.pdb` file, `Pose` or `PackedPose` object.

Parameters
----------
first : optional
    `color`

    `str` indicating a standard color (e.g. "grey").
    Default: "white"

second : optional
    `radius`

    `float` or `int` indicating the radius of the hydrogen atom stick represnetations.
    Default: 0.05

third : optional
    `polar_only`

    `True` or `False`. `True` to show only polar hydrogen atoms, and `False` to show all hydrogen atoms.
    Default: False

Returns
-------
A Viewer instance.

Constructor & Destructor Documentation

__init__()

def pyrosetta.distributed.viewer.modules.setHydrogens.__init__	(		self,
			color = "white",
			radius = 0.05,
			polar_only = False
	)

Referenced by pyrosetta.distributed.tasks.taskbase.TaskBase.__setstate__().

Member Function Documentation

apply()

def pyrosetta.distributed.viewer.modules.setHydrogens.apply	(		self,
			viewer,
			pose,
			pdbstring
	)

References pyrosetta.distributed.viewer.modules._pdbstring_to_pose(), all, pyrosetta.distributed.viewer.modules.setBackgroundColor.color, pyrosetta.distributed.viewer.modules.setDisulfides.color, pyrosetta.distributed.viewer.modules.setHydrogenBonds.color, pyrosetta.distributed.viewer.modules.setHydrogens.color, pyrosetta.distributed.viewer.modules.setSurface.color, test.Workshop9_my_shapes.MyShape.color, ObjexxFCL.len(), pyrosetta.distributed.viewer.modules.setHydrogens.polar_only, LMAX.radius, basic::sampling::orientations::QuatDBMetadata.radius, numeric::geometry::hashing::xyzStripeHash::const_iterator.radius(), numeric::geometry::hashing::Ball.radius(), numeric::sphericalVector< T >.radius(), pyrosetta.distributed.viewer.modules.setDisulfides.radius, pyrosetta.distributed.viewer.modules.setHydrogenBonds.radius, pyrosetta.distributed.viewer.modules.setHydrogens.radius, pyrosetta.distributed.viewer.modules.setStyle.radius, test.Workshop9_my_shapes.MyCircle.radius, range, and basic::options::OptionKeys::in::file.xyz.

Referenced by pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase.__setitem__(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._maybe_delete_keys_from_sm_data(), and pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask.execute().

Member Data Documentation

color

pyrosetta.distributed.viewer.modules.setHydrogens.color

Referenced by pyrosetta.distributed.viewer.modules.setBackgroundColor.apply(), pyrosetta.distributed.viewer.modules.setDisulfides.apply(), pyrosetta.distributed.viewer.modules.setHydrogenBonds.apply(), pyrosetta.distributed.viewer.modules.setHydrogens.apply(), and pyrosetta.distributed.viewer.modules.setSurface.apply().

polar_only

pyrosetta.distributed.viewer.modules.setHydrogens.polar_only

Referenced by pyrosetta.distributed.viewer.modules.setHydrogens.apply().

radius

pyrosetta.distributed.viewer.modules.setHydrogens.radius

Referenced by pyrosetta.distributed.viewer.modules.setDisulfides.apply(), pyrosetta.distributed.viewer.modules.setHydrogenBonds.apply(), pyrosetta.distributed.viewer.modules.setHydrogens.apply(), pyrosetta.distributed.viewer.modules.setStyle.apply(), and test.Workshop9_my_shapes.MyCircle.area().

---

The documentation for this class was generated from the following file:

• src/python/PyRosetta/src/pyrosetta/distributed/viewer/modules.py