basic::options::OptionKeys::full_model Namespace Reference

Namespaces
	rna

Variables
BooleanOptionKey const	full_model
StringOptionKey const	global_seq_file
ResidueChainVectorOptionKey const	cutpoint_open
ResidueChainVectorOptionKey const	cutpoint_closed
ResidueChainVectorOptionKey const	cyclize
ResidueChainVectorOptionKey const	twoprime
ResidueChainVectorOptionKey const	fiveprime_cap
StringVectorOptionKey const	other_poses
ResidueChainVectorOptionKey const	jump_res
ResidueChainVectorOptionKey const	disulfide_res
ResidueChainVectorOptionKey const	extra_min_res
ResidueChainVectorOptionKey const	extra_min_jump_res
ResidueChainVectorOptionKey const	root_res
ResidueChainVectorOptionKey const	virtual_sugar_res
ResidueChainVectorOptionKey const	virtual_res
ResidueChainVectorOptionKey const	sample_res
ResidueChainVectorOptionKey const	calc_rms_res
ResidueChainVectorOptionKey const	working_res
BooleanOptionKey const	motif_mode
BooleanOptionKey const	allow_jump_in_numbering

Variable Documentation

allow_jump_in_numbering

BooleanOptionKey const basic::options::OptionKeys::full_model::allow_jump_in_numbering

extern

calc_rms_res

ResidueChainVectorOptionKey const basic::options::OptionKeys::full_model::calc_rms_res

extern

Referenced by calc_rms_test(), cluster_outfile_test(), modeler_closure_test(), and rebuild_test().

cutpoint_closed

ResidueChainVectorOptionKey const basic::options::OptionKeys::full_model::cutpoint_closed

extern

Referenced by each_aa_test(), hermann_phase_two_minimize(), main(), rebuild_test(), and setup_rna_working_parameters().

cutpoint_open

ResidueChainVectorOptionKey const basic::options::OptionKeys::full_model::cutpoint_open

extern

Referenced by main(), rebuild_test(), setup_rna_working_parameters(), and swa_rna_sample().

cyclize

ResidueChainVectorOptionKey const basic::options::OptionKeys::full_model::cyclize

extern

Referenced by ensure_cyclic().

disulfide_res

ResidueChainVectorOptionKey const basic::options::OptionKeys::full_model::disulfide_res

extern

extra_min_jump_res

ResidueChainVectorOptionKey const basic::options::OptionKeys::full_model::extra_min_jump_res

extern

extra_min_res

ResidueChainVectorOptionKey const basic::options::OptionKeys::full_model::extra_min_res

extern

Referenced by main().

fiveprime_cap

ResidueChainVectorOptionKey const basic::options::OptionKeys::full_model::fiveprime_cap

extern

full_model

BooleanOptionKey const basic::options::OptionKeys::full_model::full_model

extern

global_seq_file

StringOptionKey const basic::options::OptionKeys::full_model::global_seq_file

extern

Referenced by main().

jump_res

ResidueChainVectorOptionKey const basic::options::OptionKeys::full_model::jump_res

extern

Referenced by main(), and rebuild_test().

motif_mode

BooleanOptionKey const basic::options::OptionKeys::full_model::motif_mode

extern

Referenced by main().

other_poses

StringVectorOptionKey const basic::options::OptionKeys::full_model::other_poses

extern

Referenced by get_rmsd(), main(), my_main(), rna_fullatom_minimize_test(), and RNA_ScoreMover::RNA_ScoreMover().

root_res

ResidueChainVectorOptionKey const basic::options::OptionKeys::full_model::root_res

extern

Referenced by main().

sample_res

ResidueChainVectorOptionKey const basic::options::OptionKeys::full_model::sample_res

extern

Referenced by cluster_rotamers(), color_by_lj_test(), erraser_monte_carlo(), get_residue_xyz_list(), is_new_cluster_center_rotamer(), is_new_cluster_center_second_stage(), is_new_cluster_center_xyz(), main(), modeler_closure_test(), modeler_map_test(), pack_phosphates(), rebuild_test(), resample_full_model_test(), setup_rna_working_parameters(), slice_ellipsoid_envelope(), slice_sample_res_and_surrounding(), and spinner_test().

twoprime

ResidueChainVectorOptionKey const basic::options::OptionKeys::full_model::twoprime

extern

virtual_res

ResidueChainVectorOptionKey const basic::options::OptionKeys::full_model::virtual_res

extern

Referenced by main(), pdb_to_silent_file(), posewrap_from_command_line(), rebuild_test(), setup_pose_setup_class(), and swa_rna_cluster().

virtual_sugar_res

ResidueChainVectorOptionKey const basic::options::OptionKeys::full_model::virtual_sugar_res

extern

Referenced by main().

working_res

ResidueChainVectorOptionKey const basic::options::OptionKeys::full_model::working_res

extern

Referenced by calc_rms_test(), cluster_outfile_test(), correct_dunbrack(), main(), prepare_threaded_model(), and stepwise_template_test().