Inheritance diagram for SameResidueTypeConstraint:

Public Member Functions
	SameResidueTypeConstraint (Size seqpos1, Size seqpos2, Real bonus)

virtual	~SameResidueTypeConstraint ()

virtual Size	natoms () const

void	show (std::ostream &out) const

virtual core::scoring::constraints::ConstraintOP	remap_resid (core::id::SequenceMapping const &seqmap) const

virtual AtomID const &	atom (Size const index) const

bool	operator== (core::scoring::constraints::Constraint const &otherin) const
	possibility to compare constraint according to data and not just pointers More...

virtual void	score (core::scoring::constraints::XYZ_Func const &xyz_func, core::scoring::EnergyMap const &weights, core::scoring::EnergyMap &emap) const

virtual void	fill_f1_f2 (AtomID const &atom, core::scoring::constraints::XYZ_Func const &xyz, Vec &F1, Vec &F2, core::scoring::EnergyMap const &weights) const

virtual core::scoring::constraints::ConstraintOP	clone () const

	SameResidueTypeConstraint (Size seqpos1, Size seqpos2, Real bonus)

virtual	~SameResidueTypeConstraint ()

virtual Size	natoms () const

void	show (std::ostream &out) const

virtual core::scoring::constraints::ConstraintOP	remap_resid (core::id::SequenceMapping const &seqmap) const

virtual AtomID const &	atom (Size const index) const

bool	operator== (core::scoring::constraints::Constraint const &otherin) const
	possibility to compare constraint according to data and not just pointers More...

virtual void	score (core::scoring::constraints::XYZ_Func const &xyz_func, core::scoring::EnergyMap const &, core::scoring::EnergyMap &emap) const

virtual void	fill_f1_f2 (AtomID const &, core::scoring::constraints::XYZ_Func const &, Vec &, Vec &, core::scoring::EnergyMap const &) const

virtual core::scoring::constraints::ConstraintOP	clone () const

	SameResidueTypeConstraint (Size seqpos1, Size seqpos2, Real bonus)

virtual	~SameResidueTypeConstraint ()

virtual Size	natoms () const

void	show (std::ostream &out) const

virtual core::scoring::constraints::ConstraintOP	remap_resid (core::id::SequenceMapping const &seqmap) const

virtual AtomID const &	atom (Size const index) const

bool	operator== (core::scoring::constraints::Constraint const &otherin) const
	possibility to compare constraint according to data and not just pointers More...

virtual void	score (core::scoring::constraints::XYZ_Func const &xyz_func, core::scoring::EnergyMap const &weights, core::scoring::EnergyMap &emap) const

virtual void	fill_f1_f2 (AtomID const &atom, core::scoring::constraints::XYZ_Func const &xyz, Vec &F1, Vec &F2, core::scoring::EnergyMap const &weights) const

virtual core::scoring::constraints::ConstraintOP	clone () const

Private Attributes
Size	seqpos1_

Size	seqpos2_

core::Real	bonus_

utility::vector1< AtomID >	atom_ids_

Constructor & Destructor Documentation

◆ SameResidueTypeConstraint() [1/3]

SameResidueTypeConstraint::SameResidueTypeConstraint	(	Size	seqpos1,
		Size	seqpos2,
		Real	bonus
	)

inline

References atom_ids_, seqpos1_, and seqpos2_.

Referenced by clone().

◆ ~SameResidueTypeConstraint() [1/3]

virtual SameResidueTypeConstraint::~SameResidueTypeConstraint ( )

inlinevirtual

◆ SameResidueTypeConstraint() [2/3]

SameResidueTypeConstraint::SameResidueTypeConstraint	(	Size	seqpos1,
		Size	seqpos2,
		Real	bonus
	)

inline

References atom_ids_, seqpos1_, and seqpos2_.

◆ ~SameResidueTypeConstraint() [2/3]

virtual SameResidueTypeConstraint::~SameResidueTypeConstraint ( )

inlinevirtual

◆ SameResidueTypeConstraint() [3/3]

SameResidueTypeConstraint::SameResidueTypeConstraint	(	Size	seqpos1,
		Size	seqpos2,
		Real	bonus
	)

inline

References atom_ids_, seqpos1_, and seqpos2_.

◆ ~SameResidueTypeConstraint() [3/3]

virtual SameResidueTypeConstraint::~SameResidueTypeConstraint ( )

inlinevirtual

Member Function Documentation

◆ atom() [1/3]

virtual AtomID const& SameResidueTypeConstraint::atom ( Size const index ) const

inlinevirtual

References atom_ids_, and ObjexxFCL::index().

◆ atom() [2/3]

virtual AtomID const& SameResidueTypeConstraint::atom ( Size const index ) const

inlinevirtual

References atom_ids_, and ObjexxFCL::index().

◆ atom() [3/3]

virtual AtomID const& SameResidueTypeConstraint::atom ( Size const index ) const

inlinevirtual

References atom_ids_, and ObjexxFCL::index().

◆ clone() [1/3]

virtual core::scoring::constraints::ConstraintOP SameResidueTypeConstraint::clone ( ) const

inlinevirtual

References SameResidueTypeConstraint().

◆ clone() [2/3]

virtual core::scoring::constraints::ConstraintOP SameResidueTypeConstraint::clone ( ) const

inlinevirtual

References SameResidueTypeConstraint().

◆ clone() [3/3]

virtual core::scoring::constraints::ConstraintOP SameResidueTypeConstraint::clone ( ) const

inlinevirtual

References SameResidueTypeConstraint().

◆ fill_f1_f2() [1/3]

virtual void SameResidueTypeConstraint::fill_f1_f2	(	AtomID const &	,
		core::scoring::constraints::XYZ_Func const &	,
		Vec &	,
		Vec &	,
		core::scoring::EnergyMap const &
	)		const

inlinevirtual

◆ fill_f1_f2() [2/3]

virtual void SameResidueTypeConstraint::fill_f1_f2	(	AtomID const &	atom,
		core::scoring::constraints::XYZ_Func const &	xyz,
		Vec &	F1,
		Vec &	F2,
		core::scoring::EnergyMap const &	weights
	)		const

inlinevirtual

◆ fill_f1_f2() [3/3]

virtual void SameResidueTypeConstraint::fill_f1_f2	(	AtomID const &	atom,
		core::scoring::constraints::XYZ_Func const &	xyz,
		Vec &	F1,
		Vec &	F2,
		core::scoring::EnergyMap const &	weights
	)		const

inlinevirtual

◆ natoms() [1/3]

virtual Size SameResidueTypeConstraint::natoms ( ) const

inlinevirtual

◆ natoms() [2/3]

virtual Size SameResidueTypeConstraint::natoms ( ) const

inlinevirtual

◆ natoms() [3/3]

virtual Size SameResidueTypeConstraint::natoms ( ) const

inlinevirtual

◆ operator==() [1/3]

bool SameResidueTypeConstraint::operator== ( core::scoring::constraints::Constraint const & otherin ) const

inline

possibility to compare constraint according to data and not just pointers

References bonus_, seqpos1_, and seqpos2_.

◆ operator==() [2/3]

bool SameResidueTypeConstraint::operator== ( core::scoring::constraints::Constraint const & otherin ) const

inline

possibility to compare constraint according to data and not just pointers

References bonus_, seqpos1_, and seqpos2_.

◆ operator==() [3/3]

bool SameResidueTypeConstraint::operator== ( core::scoring::constraints::Constraint const & otherin ) const

inline

possibility to compare constraint according to data and not just pointers

References bonus_, seqpos1_, and seqpos2_.

◆ remap_resid() [1/3]

virtual core::scoring::constraints::ConstraintOP SameResidueTypeConstraint::remap_resid ( core::id::SequenceMapping const & seqmap ) const

inlinevirtual

References bonus_, seqpos1_, and seqpos2_.

◆ remap_resid() [2/3]

virtual core::scoring::constraints::ConstraintOP SameResidueTypeConstraint::remap_resid ( core::id::SequenceMapping const & seqmap ) const

inlinevirtual

References bonus_, seqpos1_, and seqpos2_.

◆ remap_resid() [3/3]

virtual core::scoring::constraints::ConstraintOP SameResidueTypeConstraint::remap_resid ( core::id::SequenceMapping const & seqmap ) const

inlinevirtual

References bonus_, seqpos1_, and seqpos2_.

◆ score() [1/3]

virtual void SameResidueTypeConstraint::score	(	core::scoring::constraints::XYZ_Func const &	xyz_func,
		core::scoring::EnergyMap const &	,
		core::scoring::EnergyMap &	emap
	)		const

inlinevirtual

References bonus_, test.T200_Scoring::emap, basic::options::OptionKeys::blivens::score_type, seqpos1_, and seqpos2_.

◆ score() [2/3]

virtual void SameResidueTypeConstraint::score	(	core::scoring::constraints::XYZ_Func const &	xyz_func,
		core::scoring::EnergyMap const &	weights,
		core::scoring::EnergyMap &	emap
	)		const

inlinevirtual

References bonus_, test.T200_Scoring::emap, basic::options::OptionKeys::blivens::score_type, seqpos1_, seqpos2_, basic::options::OptionKeys::sc::weight, and weights().

◆ score() [3/3]

virtual void SameResidueTypeConstraint::score	(	core::scoring::constraints::XYZ_Func const &	xyz_func,
		core::scoring::EnergyMap const &	weights,
		core::scoring::EnergyMap &	emap
	)		const

inlinevirtual

References bonus_, test.T200_Scoring::emap, basic::options::OptionKeys::blivens::score_type, seqpos1_, seqpos2_, basic::options::OptionKeys::sc::weight, and weights().

◆ show() [1/3]

void SameResidueTypeConstraint::show ( std::ostream & out ) const

inline

References bonus_, seqpos1_, and seqpos2_.

Referenced by pyrosetta.distributed.viewer.core.Viewer::__call__().

◆ show() [2/3]

void SameResidueTypeConstraint::show ( std::ostream & out ) const

inline

References bonus_, seqpos1_, and seqpos2_.

Referenced by pyrosetta.distributed.viewer.core.Viewer::__call__().

◆ show() [3/3]

void SameResidueTypeConstraint::show ( std::ostream & out ) const

inline

References bonus_, seqpos1_, and seqpos2_.

Referenced by pyrosetta.distributed.viewer.core.Viewer::__call__().

Member Data Documentation

◆ atom_ids_

utility::vector1< AtomID > SameResidueTypeConstraint::atom_ids_

private

Referenced by atom(), and SameResidueTypeConstraint().

◆ bonus_

core::Real SameResidueTypeConstraint::bonus_

private

Referenced by operator==(), remap_resid(), score(), and show().

◆ seqpos1_

Size SameResidueTypeConstraint::seqpos1_

private

Referenced by operator==(), remap_resid(), SameResidueTypeConstraint(), score(), and show().

◆ seqpos2_

Size SameResidueTypeConstraint::seqpos2_

private

Referenced by operator==(), remap_resid(), SameResidueTypeConstraint(), score(), and show().

The documentation for this class was generated from the following files:

src/apps/pilot/will/old/genI213_gensym.cc
src/apps/pilot/will/old/genI213_nocontacts.cc
src/apps/pilot/will/old/genP23.cc

Public Member Functions

Private Attributes

Constructor & Destructor Documentation

◆ SameResidueTypeConstraint() [1/3]

◆ ~SameResidueTypeConstraint() [1/3]

◆ SameResidueTypeConstraint() [2/3]

◆ ~SameResidueTypeConstraint() [2/3]

◆ SameResidueTypeConstraint() [3/3]

◆ ~SameResidueTypeConstraint() [3/3]

Member Function Documentation

◆ atom() [1/3]

◆ atom() [2/3]

◆ atom() [3/3]

◆ clone() [1/3]

◆ clone() [2/3]

◆ clone() [3/3]

◆ fill_f1_f2() [1/3]

◆ fill_f1_f2() [2/3]

◆ fill_f1_f2() [3/3]

◆ natoms() [1/3]

◆ natoms() [2/3]

◆ natoms() [3/3]

◆ operator==() [1/3]

◆ operator==() [2/3]

◆ operator==() [3/3]

◆ remap_resid() [1/3]

◆ remap_resid() [2/3]

◆ remap_resid() [3/3]

◆ score() [1/3]

◆ score() [2/3]

◆ score() [3/3]

◆ show() [1/3]

◆ show() [2/3]

◆ show() [3/3]

Member Data Documentation

◆ atom_ids_

◆ bonus_

◆ seqpos1_

◆ seqpos2_